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List of works by Intikhab Alam

A kingdom-specific protein domain HMM library for improved annotation of fungal genomes

scientific article

A polyextremophilic alcohol dehydrogenase from the Atlantis II Deep Red Sea brine pool

scientific article published on 18 December 2018

A promoter-level mammalian expression atlas

scientific article

Aerobic methanotrophic communities at the Red Sea brine-seawater interface

scientific article

BEACON: automated tool for Bacterial GEnome Annotation ComparisON

scientific article published on 18 August 2015

Biotool2Web: creating simple Web interfaces for bioinformatics applications

scientific article published on January 2006

Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility

scientific article published in 2024

Comparative Genomics of the Genus , Including a Newly Isolated Strain From Kebrit Deep in the Red Sea

scientific article published on 24 April 2019

Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification in the fungi

scientific article

Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis

scientific article

Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea.

scientific article

Comparative homology agreement search: an effective combination of homology-search methods

scholarly article

Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium

scientific article

Comprehensive Genomic Analyses of the OM43 Clade, Including a Novel Species from the Red Sea, Indicate Ecotype Differentiation among Marine Methylotrophs.

scientific article published on 11 December 2015

Core microbial functional activities in ocean environments revealed by global metagenomic profiling analyses.

scientific article

Draft Genome Sequence of Enterobacter sp. Sa187, an Endophytic Bacterium Isolated from the Desert Plant Indigofera argentea

scientific article published on 16 February 2017

Draft Genome Sequence of Halomonas elongata Strain K4, an Endophytic Growth-Promoting Bacterium Enhancing Salinity Tolerance In Planta.

scientific article published on 3 November 2016

Draft Genome Sequence of Ochrobactrum intermedium Strain SA148, a Plant Growth-Promoting Desert Rhizobacterium

scientific article published on 2 March 2017

Draft Genome Sequence of Plant Growth-Promoting Micrococcus luteus Strain K39 Isolated from Cyperus conglomeratus in Saudi Arabia.

scientific article published on 26 January 2017

Draft Genome Sequence of the Phosphate-Solubilizing Bacterium Pseudomonas argentinensis Strain SA190 Isolated from the Desert Plant Indigofera argentea ⬇️

scientific article published on 22 December 2016

Draft Genome Sequence of the Plant Growth-Promoting Cupriavidus gilardii Strain JZ4 Isolated from the Desert Plant Tribulus terrestris

scientific article published on 28 July 2016

Draft Genome Sequence of the Plant Growth-Promoting Pseudomonas punonensis Strain D1-6 Isolated from the Desert Plant Erodium hirtum in Jordan

scientific article published on 12 January 2017

Draft Genome Sequence of the Plant Growth-Promoting Rhizobacterium Acinetobacter radioresistens Strain SA188 Isolated from the Desert Plant Indigofera argentea

scientific article published on 2 March 2017

Dynamic structure mediates halophilic adaptation of a DNA polymerase from the deep-sea brines of the Red Sea.

scientific article published on 24 January 2018

First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea.

scientific article

Functional metagenomic analysis of dust-associated microbiomes above the Red Sea

scientific article published on 24 September 2019

Genome Sequence of Halorhabdus tiamatea, the First Archaeon Isolated from a Deep-Sea Anoxic Brine Lake ⬇️

scientific article published on June 24, 2011

Genome Sequence of Pseudomonas sp. Strain Chol1, a Model Organism for the Degradation of Bile Salts and Other Steroid Compounds ⬇️

scientific article published on 15 January 2013

Genome Sequence of Salinisphaera shabanensis, a Gammaproteobacterium from the Harsh, Variable Environment of the Brine-Seawater Interface of the Shaban Deep in the Red Sea ⬇️

scientific article published on June 24, 2011

Genome sequence analysis of strain VG4 and its potential for the synthesis of antimicrobial metabolites

scientific article published on 24 August 2018

Genome sequence of Haloplasma contractile, an unusual contractile bacterium from a deep-sea anoxic brine lake

scientific article

Genome-wide identification, evolution and expression analysis of RING finger protein genes in Brassica rapa

scientific article published on 17 January 2017

Genomic characterization of two novel SAR11 isolates from the Red Sea, including the first strain of the SAR11 Ib clade

scientific article published on 22 June 2017

Genomic differentiation among two strains of the PS1 clade isolated from geographically separated marine habitats

scientific article published on 22 May 2014

INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles

scientific article

Important contribution of macroalgae to oceanic carbon sequestration

scientific article published on 05 August 2019

Insights into the Transcriptional Architecture of Behavioral Plasticity in the Honey Bee Apis mellifera

scientific article published on 15 June 2015

Metabolic traits of an uncultured archaeal lineage--MSBL1--from brine pools of the Red Sea.

scientific article published on 13 January 2016

Mining a database of single amplified genomes from Red Sea brine pool extremophiles-improving reliability of gene function prediction using a profile and pattern matching algorithm (PPMA)

scientific article published on 07 April 2014

No Evidence for Temperature-Dependence of the COVID-19 Epidemic

scientific article published on 31 March 2020

Rapid Evolution of Plastic-degrading Enzymes Prevalent in the Global Ocean

scientific article

Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea.

scientific article published on 14 October 2015

Role of the Hog1 stress-activated protein kinase in the global transcriptional response to stress in the fungal pathogen Candida albicans

scientific article published on 7 December 2005

Single-cell genomics reveals pyrrolysine-encoding potential in members of uncultivated archaeal candidate division MSBL1.

scientific article published on 10 May 2017

Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea--A Metagenomic Approach

scientific article published on 5 November 2015

The Genome Sequence of the Wild Tomato Provides Insights Into Salinity Tolerance

scientific article published on 04 October 2018

The genome sequence of the wild tomatoSolanum pimpinellifoliumprovides insights into salinity tolerance

Toward an understanding of the molecular mechanisms of barnacle larval settlement: a comparative transcriptomic approach

scientific article

Transcriptomic Analysis of Aedes aegypti in Response to Mosquitocidal Bacillus thuringiensis LLP29 Toxin

scientific article published in Scientific Reports

e-Fungi: a data resource for comparative analysis of fungal genomes

scientific article

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