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List of works by Hélène Touzet

A complete protocol for whole-genome sequencing of virus from clinical samples: Application to coronavirus OC43

scientific article published in May 2019

Alignments of RNA structures

scientific article

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

scientific article

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms

scientific article (publication date: 2012)

CARNAC: folding families of related RNAs

scientific article

Comparative Analysis of RNA Genes

article

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data

scientific article published on 24 June 2019

Computational identification of protein-coding sequences by comparative analysis

scientific article published on January 2009

Deciphering metatranscriptomic data

scientific article

DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data

scientific article published on 11 June 2018

Does hybridization increase evolutionary rate? Data from the 28S-rDNA D8 domain in echinoderms

scientific article

Efficient and accurate P-value computation for Position Weight Matrices

scientific article published on 11 December 2007

Efficient approximations of RNA kinetics landscape using non-redundant sampling.

scientific article published in July 2017

Finding the common structure shared by two homologous RNAs.

scientific article

MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences

scientific article published on 30 May 2008

MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes

scientific article published on 11 October 2017

Modeling alternate RNA structures in genomic sequences

scientific article published in March 2015

Predicting transcription factor binding sites using local over-representation and comparative genomics

scientific article published on 31 August 2006

Proteomic characterisation of leech microglia extracellular vesicles (EVs): comparison between differential ultracentrifugation and Optiprep™ density gradient isolation

scientific article published on 23 April 2019

RNA locally optimal secondary structures

scientific article published in October 2012

RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA.

scientific article published on 23 September 2011

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.

scientific article

TFM-Explorer: mining cis-regulatory regions in genomes

scientific article

miRkwood: a tool for the reliable identification of microRNAs in plant genomes

scientific article published on 28 June 2019

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