List of works by Nicole Vasilevsky

A Simple Standard for Ontological Mappings 2022: Updates of data model and outlook ⬇️

Conference paper

A Simple Standard for Sharing Ontological Mappings (SSSOM)

preprint published on 15 December 2021

An open source knowledge graph ecosystem for the life sciences

scientific article published in 2024

BOSC 2022: the first hybrid and 23rd annual Bioinformatics Open Source Conference

scientific article published in 2022

Characterizing Long COVID: Deep Phenotype of a Complex Condition

scientific article published on 25 November 2021

Community Approaches for Integrating Environmental Exposures into Human Models of Disease

scientific article published on 28 December 2020

Computational evaluation of exome sequence data using human and model organism phenotypes improves diagnostic efficiency.

scientific article

Conference report: Biocuration 2021 Virtual Conference

scientific article published on 28 March 2022

Curriculum Development of a Research Laboratory Methodology Course for Complementary and Integrative Medicine Students.

scientific article

Dealing with data: a case study on information and data management literacy

scientific article (publication date: 2012)

Disease insights through cross-species phenotype comparisons

scientific article

Effect of impact factor and discipline on journal data sharing policies

Effects of Hydrastis Canadensis, Commiphora Habessinica, Phytolacca Americana, and Echinacea Purpurea on Bacterial Growth

scientific article published on 01 July 2020

Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics

scientific article published on 01 September 2019

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources

article by Sebastian Köhler et al published 8 January 2019 in Nucleic Acids Research

Extension of Roles in the ChEBI Ontology

scholarly article

Gold-standard ontology-based anatomical annotation in the CRAFT Corpus

article

Guidelines for reporting single-cell RNA-seq experiments

scientific article published on 13 November 2020

How many rare diseases are there?

scientific article published on 01 February 2020

Is authorship sufficient for today's collaborative research? A call for contributor roles

scientific article published on 30 June 2020

Mondo: Unifying diseases for the world, by the world

Navigating the Phenotype Frontier: The Monarch Initiative

scientific article

Navigating the phenotype frontier: The Monarch Initiative

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

scientific article published on 13 October 2021

OX40 engagement stabilizes Mxd4 and Mnt protein levels in antigen-stimulated T cells leading to an increase in cell survival

scientific article published on 14 March 2011

On the reproducibility of science: unique identification of research resources in the biomedical literature

scientific article

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies

preprint published on 06 July 2022

Ontology based molecular signatures for immune cell types via gene expression analysis

scientific article

Overview of the interactive task in BioCreative V

scientific article (publication date: 2016)

Plain-language medical vocabulary for precision diagnosis.

scientific article published in April 2018

Registered report: A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations

scientific article

Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery

scientific article published on 01 January 2019

Reproducibility and conflicts in immune epitope data

scientific article

Reproducible and reusable research: Are journal data sharing policies meeting the mark?

scientific article published on 12 November 2016

Reproducible and reusable research: are journal data sharing policies meeting the mark?

scientific article

Research resources: curating the new eagle-i discovery system ⬇️

scientific article (publication date: 2012)

Semantic Integration of Clinical Laboratory Tests from Electronic Health Records for Deep Phenotyping and Biomarker Discovery: Supplementary materials

article

Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery

article

Significantly different clinical phenotypes associated with mutations in synthesis and transamidase+remodeling glycosylphosphatidylinositol (GPI)-anchor biosynthesis genes

scientific article published on 04 February 2020

TMOD-19. GABRIELLA MILLER KIDS FIRST DATA RESOURCE CENTER: LARGE-SCALE HARMONIZED CLINICAL AND GENOMIC DATA PLATFORM TO SUPPORT CHILDHOOD CANCER AND STRUCTURAL BIRTH DEFECT RESEARCH

scientific article published on 23 April 2019

Teaching data science fundamentals through realistic synthetic clinical cardiovascular data

scholarly article published 12 December 2017

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

scientific article

The First National Institutes of Health Institutional Training Program in Emergency Care Research: Productivity and Outcomes

article

The Hearing Impairment Ontology: A Tool for Unifying Hearing Impairment Knowledge to Enhance Collaborative Research

scientific article published on 21 November 2019

The Human Phenotype Ontology in 2017

scientific article (publication date: 28 November 2016)

The Human Phenotype Ontology in 2021

scientific article published on 02 December 2020

The Human Phenotype Ontology in 2024: phenotypes around the world

scientific article published in 2023

The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease

scientific article

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article published on 01 January 2020

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

The Monarch Initiative: Insights across species reveal human disease mechanisms

The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

The Resource Identification Initiative: A Cultural Shift in Publishing

scientific article from The Journal of Comparative Neurology

The Resource Identification Initiative: A Cultural Shift in Publishing

scientific article published on 20 November 2015 from Neuroinformatics

The Resource Identification Initiative: A cultural shift in publishing

scientific article (publication date: 2015) from F1000Research

The Resource Identification Initiative: a cultural shift in publishing

scientific article (publication date: 2016)

The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research

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