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List of works by Takeya Kasukawa

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The transcriptional landscape of the mammalian genome

scientific article
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

scientific article (publication date: 5 December 2002)
A promoter-level mammalian expression atlas

scientific article
Genome-wide analysis of mammalian promoter architecture and evolution

scientific article (publication date: June 2006)
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

scientific article
Functional annotation of a full-length mouse cDNA collection

scientific article (publication date: 8 February 2001)
An atlas of human long non-coding RNAs with accurate 5' ends.

scientific article
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

scientific article
Gateways to the FANTOM5 promoter level mammalian expression atlas

scientific article
Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article
Thyrotrophin in the pars tuberalis triggers photoperiodic response.

scientific article published in March 2008
A functional genomics strategy reveals clockwork orange as a transcriptional regulator in the Drosophila circadian clock

scientific article
Measurement of internal body time by blood metabolomics.

scholarly article
Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs

scientific article published in April 2006
Single-cell gene profiling defines differential progenitor subclasses in mammalian neurogenesis.

scientific article published on September 2008
An integrated expression atlas of miRNAs and their promoters in human and mouse.

scientific article
Human blood metabolite timetable indicates internal body time

scientific article
Discrimination of non-protein-coding transcripts from protein-coding mRNA.

scientific article published on January 2006
CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis

scientific article
EpiFactors: a comprehensive database of human epigenetic factors and complexes

scientific article
Proof-by-synthesis of the transcriptional logic of mammalian circadian clocks

scientific article published on 21 September 2008
Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays

scientific article published on June 2003
Acute induction of Eya3 by late-night light stimulation triggers TSHβ expression in photoperiodism

scientific article
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

scientific article published on 27 October 2016
FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones.

scientific article
Quantitative expression profile of distinct functional regions in the adult mouse brain

scientific article
CDS annotation in full-length cDNA sequence

scientific article
Foxg1 coordinates the switch from nonradially to radially migrating glutamatergic subtypes in the neocortex through spatiotemporal repression

scientific article published on 21 March 2013
Alternate transcription of the Toll-like receptor signaling cascade

scientific article published on 17 February 2006
FANTOM5 CAGE profiles of human and mouse samples

scientific article published on 29 August 2017
Transcriptomic landscape of the primitive streak.

scientific article published on 28 July 2010
FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki

scientific article
READ: RIKEN Expression Array Database.

scientific article published on January 2002
Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units

scientific article published on 28 April 2006
Cell-cycle-independent transitions in temporal identity of mammalian neural progenitor cells

scientific article
Development and evaluation of an automated annotation pipeline and cDNA annotation system

scientific article
Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis

article
Connecting sequence and biology in the laboratory mouse

scientific article
C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

scientific article published in Nature Communications
Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags

scientific article published in February 2004
The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types

scientific article published on 29 August 2017
Muscarinic Acetylcholine Receptors Chrm1 and Chrm3 Are Essential for REM Sleep

Comparative transcriptomics of primary cells in vertebrates

scientific article published on 27 July 2020
SCPortalen: human and mouse single-cell centric database

scientific article published on 17 October 2017
Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS

scientific article
FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies

scientific article published on 29 August 2017
Transcriptome tomography for brain analysis in the web-accessible anatomical space

scientific article
Self-patterning of rostral-caudal neuroectoderm requires dual role of Fgf signaling for localized Wnt antagonism

scientific article published on 7 November 2017
Comprehensive analysis of the mouse metabolome based on the transcriptome

scientific article published on June 2003
Systematic analysis of transcription start sites in avian development

scientific article published on 5 September 2017

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