List of works by Alan J Bridge

A potential role for integrins in host cell entry by SARS-CoV-2

scientific article published on 01 March 2020

An enhanced workflow for variant interpretation in UniProtKB/Swiss-Prot improves consistency and reuse in ClinVar

article

An integrated ontology resource to explore and study host-virus relationships

scientific article

An intrinsically disordered proteins community for ELIXIR

scientific article published on 15 October 2019

Annotation of biologically relevant ligands in UniProtKB using ChEBI

scientific article published on 9 December 2022

Application of text-mining for updating protein post-translational modification annotation in UniProtKB

scientific article

Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase

scientific article (publication date: 2009)

Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB

scientific article published in 2021

DynaStI: A Dynamic Retention Time Database for Steroidomics.

scientific article published on 30 April 2019

Enzyme annotation in UniProtKB using Rhea

scientific article published on 01 March 2020

Erratum: Corrigendum: Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

article

Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation.

scientific article

Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data

scientific article

Extending the Schizosaccharomyces pombe molecular genetic toolbox.

scientific article

Gene Ontology Consortium: going forward

scientific article (publication date: 2015)

Gene Ontology annotations and resources

scientific article

Generation of Molecular Models and Pathways

Genetic variations and diseases in UniProtKB/Swiss-Prot: the ins and outs of expert manual curation

scientific article published on 24 June 2014

Guiding the choice of informatics software and tools for lipidomics research applications

scientific article published on 21 December 2022

HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes

scientific article published on 01 February 2020

HAMAP in 2013, new developments in the protein family classification and annotation system

scientific article

HAMAP in 2015: updates to the protein family classification and annotation system

scientific article

Induction of an interferon response by RNAi vectors in mammalian cells

article

IntAct--open source resource for molecular interaction data

scientific article (publication date: 2007)

InterPro in 2017-beyond protein family and domain annotations

scientific article

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

article by Alex Mitchell et al published 6 November 2018 in Nucleic Acids Research

Interpreting the lipidome: bioinformatic approaches to embrace the complexity

scientific article published on 06 June 2021

MetaNetX/MNXref--reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks

scientific article

Navigating in vitro bioactivity data by investigating available resources using model compounds

scientific article published on 29 April 2019

New and continuing developments at PROSITE.

scientific article

Ongoing and future developments at the Universal Protein Resource

scientific article

Protection from HIV-1 infection of primary CD4 T cells by CCR5 silencing is effective for the full spectrum of CCR5 expression.

scientific article published in October 2003

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

scientific article

Reconciliation of metabolites and biochemical reactions for metabolic networks

scientific article

Reorganizing the protein space at the Universal Protein Resource (UniProt)

scientific article (publication date: 2012)

Rhea, the reaction knowledgebase in 2022

scientific article published on 01 January 2022

Rhea--a manually curated resource of biochemical reactions

scientific article published on December 2011

Scaling up data curation using deep learning: An application to literature triage in genomic variation resources

scientific article published on 13 August 2018

Suppression of the Schizosaccharomyces pombe cut12.1 cell-cycle defect by mutations in cdc25 and genes involved in transcriptional and translational control

scientific article published on 3 April 2007

SwissBioPics—an interactive library of cell images for the visualization of subcellular location data

scientific article published in January 2022

The Gene Ontology knowledgebase in 2023

scientific article published in 2023

The IntAct molecular interaction database in 2010

scientific article (publication date: 2010)

The IntAct molecular interaction database in 2012

scientific article

The InterPro protein families and domains database: 20 years on

scientific article published on 06 November 2020

The SIB Swiss Institute of Bioinformatics Semantic Web of data

scientific article published on 25 October 2023

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases

scientific article (publication date: 4 January 2016)

The SwissLipids knowledgebase for lipid biology

scientific article published on 5 May 2015

The UniProt-GO Annotation database in 2011.

scientific article published on 28 November 2011

The UniProtKB guide to the human proteome

scientific article published on 20 February 2016

The fission yeast SPB component Cut12 links bipolar spindle formation to mitotic control.

scientific article

Towards a unified open access dataset of molecular interactions

scientific article published on 01 December 2020

UniPathway: a resource for the exploration and annotation of metabolic pathways

scientific article published on 18 November 2011

UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View

scientific article published in January 2016

Updates in Rhea - an expert curated resource of biochemical reactions

scientific article

Updates in Rhea - an expert curated resource of biochemical reactions

scientific article published on 15 December 2016

Updates in Rhea--a manually curated resource of biochemical reactions

scientific article

Updates in Rhea: SPARQLing biochemical reaction data

scientific article

pfsearchV3: a code acceleration and heuristic to search PROSITE profiles

scientific article published on 16 March 2013

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