List of works by Rafael C. Jimenez

A community proposal to integrate proteomics activities in ELIXIR

scientific article

A global perspective on bioinformatics training needs

A new reference implementation of the PSICQUIC web service

scientific article published on 13 May 2013

Best practices in bioinformatics training for life scientists

scientific article published on 25 June 2013

BioCIDER: a Contextualisation InDEx for biological Resources discovery

scientific article published on 12 April 2017

BioContainers: An open-source and community-driven framework for software standardization

scientific article

BioJS: an open source JavaScript framework for biological data visualization

scientific article

BioJS: an open source standard for biological visualisation - its status in 2014

scientific article

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.

scientific article

Bioinformatics Workflows and Web Services in Systems Biology Made Easy for Experimentalists

scientific article published on 01 January 2013

Bioschemas: From Potato Salad to Protein Annotation ⬇️

scientific article

DAS writeback: a collaborative annotation system ⬇️

scientific article

Dasty2, an Ajax protein DAS client

scientific article published on 11 August 2008

Dasty3, a WEB framework for DAS.

scientific article published on 28 July 2011

Data integration in biological research: an overview

scientific article

Discovering and linking public omics data sets using the Omics Discovery Index.

scientific article

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Four simple recommendations to encourage best practices in research software

scientific article

Future opportunities and trends for e-infrastructures and life sciences: going beyond the grid to enable life science data analysis

scientific article

General guidelines for biomedical software development.

scientific article

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article (publication date: 20 March 2017)

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

scientific article

Integrating biological data--the Distributed Annotation System

scientific article

Integration of cardiac proteome biology and medicine by a specialized knowledgebase

scientific article

KEGGViewer, a BioJS component to visualize KEGG Pathways.

scientific article

Low budget analysis of Direct-To-Consumer genomic testing familial data

scientific article (publication date: 2012)

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.

scientific article

MyDas, an extensible Java DAS server

scientific article

OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology

scientific article

PIsCO: A Performance indicators framework for collection of bioinformatics resource metrics

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

scientific article (publication date: 29 June 2011)

Proteomics data exchange and storage: the need for common standards and public repositories

scientific article

PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers

scientific article

Recommendations for the packaging and containerizing of bioinformatics software

Recommendations for the packaging and containerizing of bioinformatics software

scientific article published on 14 June 2018

Sequence, a BioJS component for visualising sequences

scientific article published on 13 February 2014

Teaching the fundamentals of biological data integration using classroom games

scientific article (publication date: 2012)

Ten simple rules to run a successful BioHackathon

scientific article published on 07 May 2020

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers

scientific article

The IntAct molecular interaction database in 2012

scientific article

The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases

scientific article (publication date: 2014)

The Protein Feature Ontology: a tool for the unification of protein feature annotations

scientific article

The bio.tools registry of software tools and data resources for the life sciences

article

The future of metabolomics in ELIXIR

scientific article published in 2017

The future of metabolomics in ELIXIR.

scientific article

Tools and data services registry: a community effort to document bioinformatics resources

scientific article

Top 10 metrics for life science software good practices

scientific article published on 16 August 2016

Uniform Resolution of Compact Identifiers for Biomedical Data

preprint

Uniform resolution of compact identifiers for biomedical data.

scientific article

easyDAS: automatic creation of DAS servers

scientific article published on 18 January 2011

iAnn: an event sharing platform for the life sciences

scientific article published on 05 June 2013

myKaryoView: a light-weight client for visualization of genomic data

scientific article published in 2011

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