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List of works by Samuel H Payne

A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets

scientific article published on 23 November 2021

A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms

scientific article published on 16 April 2018

A Skyline Plugin for Pathway-Centric Data Browsing

scientific article

A multidimensional chromatography technology for in-depth phosphoproteome analysis

scientific article published on 11 April 2008

A protein standard that emulates homology for the characterization of protein inference algorithms

scholarly article published 19 December 2017

A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry.

scientific article published on 28 September 2017

Accounting for population variation in targeted proteomics

scientific article published on 16 December 2013

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.

scientific article

An Optimized Informatics Pipeline for Mass Spectrometry-Based Peptidomics

scientific article

Author Correction: Informed-Proteomics: open-source software package for top-down proteomics

scientific article published on 01 July 2018

Automated data extraction from in situ protein-stable isotope probing studies

scientific article

Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

scientific article

Beyond the proteome: Mass Spectrometry Special Interest Group (MS-SIG) at ISMB/ECCB 2013.

scientific article published on 3 March 2014

Blazing Signature Filter: a library for fast pairwise similarity comparisons

scientific article published on 11 June 2018

Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies

scientific article

Comparative omics-driven genome annotation refinement: application across Yersiniae

scientific article

Comprehensive quantitative analysis of ovarian and breast cancer tumor peptidomes.

scientific article

Correcting systematic bias and instrument measurement drift with mzRefinery

scientific article

Detecting and removing data artifacts in Hadamard transform ion mobility-mass spectrometry measurements

scientific article

Detecting fabrication in large-scale molecular omics data

scientific article published on 30 November 2021

Discovery and revision of Arabidopsis genes by proteogenomics

scholarly article

Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium

scientific article

Extracting Pathway-level Signatures from Proteogenomic Data in Breast Cancer Using Independent Component Analysis

scientific article published on 18 June 2019

Familiarity Vs Trust: A Comparative Study of Domain Scientists' Trust in Visual Analytics and Conventional Analysis Methods.

scientific article

Fully Automated Sample Processing and Analysis Workflow for Low-Input Proteome Profiling

scientific article published on 22 December 2020

GlyQ-IQ: glycomics quintavariate-informed quantification with high-performance computing and GlycoGrid 4D visualization

scientific article

Haloferax volcanii archaeosortase is required for motility, mating, and C-terminal processing of the S-layer glycoprotein.

scientific article

How many signal peptides are there in bacteria?

scientific article published on April 2013

Identification of widespread adenosine nucleotide binding in Mycobacterium tuberculosis

scientific article published on January 2013

Informed-Proteomics: open-source software package for top-down proteomics.

scientific article published on 07 August 2017

Inhibition of interleukin-1 receptor-associated kinase-1 is a therapeutic strategy for acute myeloid leukemia subtypes.

scientific article

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.

scientific article published on 28 June 2016

LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets

scientific article published on 05 September 2013

LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data

scientific article

Methods, Tools and Current Perspectives in Proteogenomics

scientific article published on 29 April 2017

Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks.

scientific article published on 08 September 2016

PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data.

scientific article published on 07 August 2017

PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations

scientific article

Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data

scientific article published on 27 July 2015

Phosphorylation-specific MS/MS scoring for rapid and accurate phosphoproteome analysis

scientific article published on 19 June 2008

Proteogenomic analysis of bacteria and archaea: a 46 organism case study

scientific article

Proteomics of natural bacterial isolates powered by deep learning-based de novo identification

scholarly article published 27 September 2018

Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards.

scientific article published on 19 December 2018

Reproducibility and Transparency by Design

scientific article published on 04 July 2019

Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

scientific article published on 14 December 2015

Signatures for mass spectrometry data quality

scientific article

The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity

scientific article

The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol.

scientific article

The utility of protein and mRNA correlation

scientific article published on 23 November 2014

Top-Down Characterization of the Post-Translationally Modified Intact Periplasmic Proteome from the Bacterium Novosphingobium aromaticivorans.

scientific article published on 10 March 2013

Toward a standard in structural genome annotation for prokaryotes

scientific article

Unexpected diversity of signal peptides in prokaryotes

scientific article published on 20 November 2012

VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data

scientific article

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