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List of works by Jacob Joseph Hughey

Automated quality control and cell identification of droplet-based single-cell data using dropkick

scientific article published on 09 April 2021

Computational modeling of mammalian signaling networks ⬇️

scientific article published on March 1, 2010

Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record

scientific article published on 04 November 2019

Distinct Components of Photoperiodic Light Are Differentially Encoded by the Mammalian Circadian Clock

scientific article published on 11 June 2020

Eating breakfast and avoiding late-evening snacking sustains lipid oxidation

scientific article published on 27 February 2020

Guidelines for Genome-Scale Analysis of Biological Rhythms

scientific article published on November 2017

High-sensitivity measurements of multiple kinase activities in live single cells

scientific article published on June 2014

Improving the phenotype risk score as a scalable approach to identifying patients with Mendelian disease

scientific article published on 01 December 2019

Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology

scientific article published on 9 February 2016

LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

scientific article published on 25 November 2018

Live-cell measurements of kinase activity in single cells using translocation reporters

scientific article published on 21 December 2017

Machine learning identifies a compact gene set for monitoring the circadian clock in human blood.

scientific article published on 28 February 2017

Microfluidic platform for real-time signaling analysis of multiple single T cells in parallel

scientific article

NF-κB signaling dynamics is controlled by a dose-sensing autoregulatory loop

scientific article published on 30 April 2019

Phenotype risk scores identify patients with unrecognized Mendelian disease patterns

scientific article published in Science

Population-level rhythms in human skin with implications for circadian medicine

article published in the Proceedings of the National Academy of Sciences of the United States of America

Pulling the covers in electronic health records for an association study with self-reported sleep behaviors

scientific article published on 05 September 2018

Releasing a preprint is associated with more attention and citations for the peer-reviewed article

scientific article published on 6 December 2019

Self-reported dietary adherence, disease-specific symptoms, and quality of life are associated with healthcare provider follow-up in celiac disease

scientific article published on 11 December 2017

Single-cell NF-kappaB dynamics reveal digital activation and analogue information processing.

scientific article published on 27 June 2010

Single-cell and population NF-κB dynamic responses depend on lipopolysaccharide preparation

scientific article

Tau-independent Phase Analysis: A Novel Method for Accurately Determining Phase Shifts.

scientific article published in April 2018

The microfluidic multitrap nanophysiometer for hematologic cancer cell characterization reveals temporal sensitivity of the calcein-AM efflux assay

scientific article

The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants

scientific article published in 2022

The risks of using the chi-square periodogram to estimate the period of biological rhythms

scientific article published on 06 January 2021

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system

scientific article published on 26 January 2016

pmparser and PMDB: resources for large-scale, open studies of the biomedical literature

scientific article published on 11 March 2021

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