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List of works by Simon Joly

A Pleistocene inter-tribal allopolyploidization event precedes the species radiation of Pachycladon (Brassicaceae) in New Zealand

scientific article published on 28 February 2009

A four-year phytoremediation trial to decontaminate soil polluted by wood preservatives: phytoextraction of arsenic, chromium, copper, dioxins and furans

scientific article published on 09 July 2020

A multi‐platform package for the analysis of intra‐ and interspecific trait evolution

scientific article published in 2020

A statistical approach for distinguishing hybridization and incomplete lineage sorting

scientific article published in August 2009

An approach to transcriptome analysis of non-model organisms using short-read sequences

scientific article published in January 2008

An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers (Helianthus )

scientific article published on 23 August 2018

Bioclimatic niches are conserved and unrelated to pollination syndromes in Antillean Gesneriaceae

scientific article published in November 2017

Comparative Transcriptomic Approaches Exploring Contamination Stress Tolerance in Salix sp. Reveal the Importance for a Metaorganismal de Novo Assembly Approach for Nonmodel Plants

scientific article

Correction

scientific article published in 2010

Delimiting Species Boundaries in Rosa Sect. Cinnamomeae (Rosaceae) in Eastern North America

scientific article published in 2007

Demographic signatures accompanying the evolution of selfing in Leavenworthia alabamica

scientific article published on 3 January 2011

Does mate limitation in self-incompatible species promote the evolution of selfing? The case of Leavenworthia alabamica

scientific article published on 10 December 2009

Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead.

scientific article

Evolution and Phylogenetic Diversity of Yam Species (Dioscorea spp.): Implication for Conservation and Agricultural Practices

scientific article published on 21 December 2015

Evolution of intraspecific floral variation in a generalist–specialist pollination system

scientific article published in 2024

Evolution of triploidy in Apios americana (Leguminosae) revealed by genealogical analysis of the histone H3-D gene

scientific article

Evolutionary dynamics and preferential expression of homeologous 18S-5.8S-26S nuclear ribosomal genes in natural and artificial glycine allopolyploids

scientific article published on 14 April 2004

Explaining forest productivity using tree functional traits and phylogenetic information: two sides of the same coin over evolutionary scale?

scientific article

Explaining naturalization and invasiveness: new insights from historical ornamental plant catalogs ⬇️

scientific article

Fast diploidization in close mesopolyploid relatives of Arabidopsis

scientific article (publication date: July 2010)

Genetic architecture of pollination syndrome transition between hummingbird-specialist and generalist species in the genus Rhytidophyllum (Gesneriaceae)

scientific article published on 18 June 2015

Genetic structure of the American ginseng (Panax quinquefolius L.) in Eastern Canada using reduced-representation high-throughput sequencing

article

Global dispersal and diversification of the genus Schoenus (Cyperaceae) from the Western Australian biodiversity hotspot ⬇️

scientific article published in June 2021

Greater pollination generalization is not associated with reduced constraints on corolla shape in Antillean plants.

scientific article published on 13 December 2017

Haplotype networks can be misleading in the presence of missing data

scientific article

Impact of RNA-seq attributes on false positive rates in differential expression analysis of de novo assembled transcriptomes

scientific article

Incorporating allelic variation for reconstructing the evolutionary history of organisms from multiple genes: An example from Rosa in North America

scientific article published in August 2006

Increasing phytoremediation efficiency and reliability using novel omics approaches

scientific article

JML: testing hybridization from species trees

scientific article published on 08 September 2011

Measuring branch support in species trees obtained by gene tree parsimony

scientific article published in February 2009

Meta-transcriptomics indicates biotic cross-tolerance in willow trees cultivated on petroleum hydrocarbon contaminated soil

scientific article published on 12 October 2015

Migration rates, frequency-dependent selection and the self-incompatibility locus in Leavenworthia (brassicaceae).

scientific article published on 11 April 2011

Molecular markers indicate that the narrow Québec endemics Rosa rousseauiorum and Rosa williamsii are synonymous with the widespread Rosa blanda

scientific article published in 2005

Phylogenetic Implications of the Multiple Losses of the Mitochondrial coxII.i3 Intron in the Angiosperms

scholarly article by Simon Joly et al published March 2001 in International Journal of Plant Sciences

Phylogenetic Relationships in the Genus Rosa : New Evidence from Chloroplast DNA Sequences and an Appraisal of Current Knowledge

article

Phylogeny and biogeography of wild roses with specific attention to polyploids

scientific article

Phylogeny of dinoflagellate plastid genes recently transferred to the nucleus supports a common ancestry with red algal plastid genes.

scientific article published on 6 February 2008

Pollinator performance of the pollination generalist Rhytidophyllum bicolor (Gesneriaceae) in Haiti 15 months after the Matthew hurricane ⬇️

scholarly article published in 2020

Polyploid and hybrid evolution in roses east of the Rocky Mountains

scientific article published on March 2006

Red and yellow pigments in autumn leaves are associated with higher nitrogen resorption

scientific article published on 24 January 2022

Regional plant abundance explains patterns of host use by pollen‐specialist bees in eastern <scp>N</scp>orth <scp>A</scp>merica

scientific article published in 2023

Repeated evolution of a reproductive polyphenism in plants is strongly associated with bilateral flower symmetry

scientific article published in 2021

Reversing extinction trends: new uses of (old) herbarium specimens to accelerate conservation action on threatened species

scientific article published on 06 December 2020

Soil contamination alters the willow root and rhizosphere metatranscriptome and the root-rhizosphere interactome.

scientific article published on 12 January 2018

Species delimitation in the Caribbean <i>Gesneria viridiflora</i> complex (Gesneriaceae) reveals unsuspected endemism

scientific article published on 24 October 2017

Species radiation by niche shifts in New Zealand's rockcresses (Pachycladon, Brassicaceae).

scientific article

Structuration of the genetic and metabolite diversity among Prince Edward Island cultivated wild rose ecotypes

Symbiotic association between Salix purpurea L. and Rhizophagus irregularis: modulation of plant responses under copper stress.

scientific article published on 6 November 2015

Temperate Forests Dominated by Arbuscular or Ectomycorrhizal Fungi Are Characterized by Strong Shifts from Saprotrophic to Mycorrhizal Fungi with Increasing Soil Depth

scientific article published on 17 June 2020

Testing Hybridization Hypotheses with Morphometry: the Case of Eastern American Arctic Species of Potentilla sect. Niveae (Rosaceae)

scientific article published in 2014

The Level of Pollination Specialization Affects the Relationship between the Shape of Flowers and the Bills of Their Hummingbird Pollinators in Antillean Gesneriaceae

scientific article published on 27 January 2022

Transcriptomic Response of Purple Willow (Salix purpurea) to Arsenic Stress

scientific article published on 28 June 2017

Variation in flower size and shape of <i>Impatiens capensis</i> is correlated with urbanization in Montreal, Canada

scientific article published in 2023

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