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List of works by Monica Chagoyen

A literature-based similarity metric for biological processes.

scientific article

A variant to the “random approximation” of the reference-free alignment algorithm

Assessment of protein set coherence using functional annotations

scientific article

Bacterial Feature Finder (BaFF)-a system for extracting features overrepresented in sets of prokaryotic organisms

scientific article published on 01 September 2019

CBR-Tagger

Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology.

scientific article published on 16 January 2018

Characterization of clinical signs in the human interactome

scientific article

Clinical, genetics and bioinformatics characterization of a campomelic dysplasia case report

scientific article published on 26 November 2015

Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology

scientific article

Complex genetic and epigenetic regulation deviates gene expression from a unifying global transcriptional program

scientific article published on 17 September 2019

Design and realization of an on-line database for multidimensional microscopic images of biological specimens

scientific article published in April 1999

Designing and executing scientific workflows with a programmable integrator.

scientific article published in April 2004

Discovering semantic features in the literature: a foundation for building functional associations

scientific article

EMDep: a web-based system for the deposition and validation of high-resolution electron microscopy macromolecular structural information

scientific article

FEMME database: topologic and geometric information of macromolecules

scientific article published in October 2003

Factors affecting interactome-based prediction of human genes associated with clinical signs

scientific article

Functional Analysis of Metabolomics Data

scientific article

Functional Classification of Genes Using Non-Negative Independent Component Analysis

article

Functional signature for the recognition of specific target mRNAs by human Staufen1 protein.

scientific article published on 26 January 2014

GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists

scientific article published on January 2007

Genetic polymorphisms among C57BL/6 mouse inbred strains

scientific article published on 27 May 2010

Integrated analysis of gene expression by Association Rules Discovery

scientific article

MBRole: enrichment analysis of metabolomic data

scientific article

Molecular determinants of the ATP hydrolysis asymmetry of the CCT chaperonin complex

scholarly article by Monica Chagoyen published in February 2014

Named Entity Recognition and Normalization: A Domain-Specific Language Approach

New electron microscopy database and deposition system

scientific article (publication date: November 2002)

Nuclear but not cytosolic phosphoinositide 3-kinase beta has an essential function in cell survival

scientific article

Organising multi-dimensional biological image information: the BioImage Database.

scientific article published on January 1999

PMIDigest: Interactive Review of Large Collections of PubMed Entries to Distill Relevant Information

scientific article published in 2023

Practical Protein Bioinformatics

Quantifying the biological significance of gene ontology biological processes--implications for the analysis of systems-wide data.

scientific article

Rare disease relations through common genes and protein interactions

article

SENT: semantic features in text

scientific article published on 20 May 2009

Strigolactone promotes degradation of DWARF14, an α/β hydrolase essential for strigolactone signaling in Arabidopsis

scientific article published in 2014

Structural Characterization of the Bacteriophage T7 Tail Machinery

scientific article

The Opposing Roles of PIK3R1/p85α and PIK3R2/p85β in Cancer

scientific article published on 16 March 2019

Tools for the functional interpretation of metabolomic experiments

scientific article published on 14 October 2012

Wavelet-based denoising methods: a comparative study with applications in microscopy

bioNMF: a versatile tool for non-negative matrix factorization in biology

scientific article

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