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List of works by Richard Emes

23 Genome-wide and positional homopolymeric tract enrichment at promoter-exon boundaries and exclusion of nucleosomes inPlasmodiumspp. and related parasites

A Data-Centric Strategy for Modern Biobanking

scientific article published on January 2015

A Trematode Parasite Derived Growth Factor Binds and Exerts Influences on Host Immune Functions via Host Cytokine Receptor Complexes

scientific article

A comparative approach to understanding tissue-specific expression of uncoupling protein 1 expression in adipose tissue

scientific article (publication date: 2012)

A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome

scientific article

A distinct bacterial dysbiosis associated skin inflammation in ovine footrot

scientific article published on 24 March 2017

A novel member of the let-7 microRNA family is associated with developmental transitions in filarial nematode parasites

scientific article published on 22 April 2015

A predictive model for canine dilated cardiomyopathy-a meta-analysis of Doberman Pinscher data

scientific article

Adaptation to the chicken intestine in Salmonella Enteritidis PT4 studied by transcriptional analysis

scientific article published on 9 August 2011

Adaptive evolution of Toll-like receptor 5 in domesticated mammals

scientific article

Analysis of Mitochondrial haemoglobin in Parkinson's disease brain

scientific article published on 12 May 2016

Analysis of the spatial and temporal arrangement of transcripts over intergenic regions in the human malarial parasite Plasmodium falciparum.

scientific article

Antiepileptic drugs and the fetal epigenome

article

Area 51: How do Acanthamoeba invade the central nervous system?

scientific article

Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes

scientific article

Bioinformatic perspectives in the neuronal ceroid lipofuscinoses

scientific article

Characterisation of a group of endogenous gammaretroviruses in the canine genome.

scientific article published on 27 September 2012

Characterisation of retroviruses in the horse genome and their transcriptional activity via transcriptome sequencing.

scientific article published on 4 August 2012

Characterisation of the horse transcriptome from immunologically active tissues

scientific article

Clinical research: developing an appropriate career structure

scientific article published in November 2015

Cloning and characterisation of mmc-1, a microfilarial-specific gene, from Brugia pahangi

scientific article

Combined exome and whole-genome sequencing identifies mutations in ARMC4 as a cause of primary ciliary dyskinesia with defects in the outer dynein arm.

scientific article

Combined influence of gene-specific cord blood methylation and maternal smoking habit on birth weight

scientific article published in February 2013

Comparative evolutionary genomics of androgen-binding protein genes

scientific article published on 15 July 2004

Comparison of clustering methods for investigation of genome-wide methylation array data

scientific article

Comparison of the genomes of human and mouse lays the foundation of genome zoology

scientific article (publication date: April 2003)

Control of gene expression in Plasmodium falciparum - ten years on.

scientific article published on 06 December 2008

DNA methylation at diagnosis is associated with response to disease-modifying drugs in early rheumatoid arthritis.

scientific article published on 25 November 2016

DNA methylation profiling of synovial fluid FLS in rheumatoid arthritis reveals changes common with tissue-derived FLS.

scientific article

Detection and analysis of RNA methylation

scientific article published on 26 April 2019

Differential and defective expression of Koala Retrovirus reveal complexity of host and virus evolution

Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus

scientific article

Duplicated paralogous genes subject to positive selection in the genome of Trypanosoma brucei

scientific article

Endogenous retroviruses in primates.

scientific article published on 3 October 2011

Epidrug mediated re-expression of miRNA targeting the HMGA transcripts in pituitary cells

scientific article

Epigenome-wide profiling identifies significant differences in DNA methylation between matched-pairs of T- and B-lymphocytes from healthy individuals

scientific article

Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents

scientific article published on April 2004

Evolution of NMDA receptor cytoplasmic interaction domains: implications for organisation of synaptic signalling complexes

scientific article

Evolution of complexity in the zebrafish synapse proteome.

scientific article published on 02 March 2017

Evolution of gene expression levels in the male reproductive organs of mosquitoes

article

Evolution of synapse complexity and diversity

scientific article published on January 2012

Evolutionary expansion and anatomical specialization of synapse proteome complexity.

scientific article published on 8 June 2008

Exome sequencing identifies DYNC2H1 mutations as a common cause of asphyxiating thoracic dystrophy (Jeune syndrome) without major polydactyly, renal or retinal involvement

scientific article (publication date: May 2013)

Gene Expression Profile Induced by Two Different Variants of Street Rabies Virus in Mice

scientific article published on 27 March 2022

Genome-wide DNA methylation profiling in rheumatoid arthritis identifies disease-associated methylation changes that are distinct to individual T- and B-lymphocyte populations

scientific article

Genome-wide profiling in treatment-naive early rheumatoid arthritis reveals DNA methylome changes in T and B lymphocytes

scientific article published on 10 November 2015

Hirudo medicinalis: a platform for investigating genes in neural repair.

scientific article published in March 2005

HmCRIP, a cysteine-rich intestinal protein, is expressed by an identified regenerating nerve cell

scientific article

Homopolymer tract organization in the human malarial parasite Plasmodium falciparum and related Apicomplexan parasites

scientific article

Hsp-90 and the biology of nematodes

scientific article

Identification of DNA methylation biomarkers from Infinium arrays

scientific article

Identification of stable reference genes for quantitative PCR in koalas

article

Identifying genes for neuron survival and axon outgrowth in Hirudo medicinalis

scientific article published in January 2004

Identifying the cellular targets of drug action in the central nervous system following corticosteroid therapy

scientific article

Inferring Function from Homology

scientific article published on January 2017

Inferring function from homology

scientific article published in January 2008

Initial sequencing and comparative analysis of the mouse genome

scientific article

Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence

scientific article (publication date: 12 February 2013)

Knockdown of embryonic myosin heavy chain reveals an essential role in the morphology and function of the developing heart

scientific article

Koala retrovirus viral load and disease burden in distinct northern and southern koala populations

scientific article published on 14 January 2020

LINE-1 DNA methylation is inversely correlated with cord plasma homocysteine in man: a preliminary study

scientific article published on 18 August 2009

Make way for the 'next generation': application and prospects for genome-wide, epigenome-specific technologies in endocrine research

scientific article published on 29 May 2012

Mapping B-cell responses to Salmonella enterica serovars Typhimurium and Enteritidis in chickens for the discrimination of infected from vaccinated animals

scientific article

Mapping polyclonal antibody responses to bacterial infection using next generation phage display

scientific article

Maternal genome-wide DNA methylation profiling in gestational diabetes shows distinctive disease-associated changes relative to matched healthy pregnancies.

scientific article

Metagenomics reveals impact of geography and acute diarrheal disease on the Central Indian human gut microbiome

scientific article published on 27 May 2020

Methylation of HOXA9 and ISL1 Predicts Patient Outcome in High-Grade Non-Invasive Bladder Cancer

scientific article published on 2 September 2015

Methylation of the FGFR2 gene is associated with high birth weight centile in humans

scientific article published on January 2014

Mitochondrial phosphoenolpyruvate carboxykinase (PEPCK-M) and serine biosynthetic pathway genes are co-ordinately increased during anabolic agent-induced skeletal muscle growth.

scientific article

Molecular Epidemiology of Streptococcus uberis Clinical Mastitis in Dairy Herds: Strain Heterogeneity and Transmission.

scientific article

Molecular characterization of adipose tissue in the African elephant (Loxodonta africana)

scientific article (publication date: 2014)

Multiple groups of endogenous epsilon-like retroviruses conserved across primates.

scientific article

Mutations in CCDC39 and CCDC40 are the major cause of primary ciliary dyskinesia with axonemal disorganization and absent inner dynein arms

scientific article

Mutations in ZMYND10, a gene essential for proper axonemal assembly of inner and outer dynein arms in humans and flies, cause primary ciliary dyskinesia

scientific article

Mutations in radial spoke head protein genes RSPH9 and RSPH4A cause primary ciliary dyskinesia with central-microtubular-pair abnormalities

scientific article

Mutations in the gene encoding IFT dynein complex component WDR34 cause Jeune asphyxiating thoracic dystrophy

scientific journal article

N6-methyladenosine regulates the stability of RNA:DNA hybrids in human cells

scientific article published on 16 December 2019

Novel ovine polymorphisms and adaptive evolution in mammalian TLR2 suggest existence of multiple pathogen binding regions

scientific article published on 26 February 2014

PIMMS (Pragmatic Insertional Mutation Mapping System) Laboratory Methodology a Readily Accessible Tool for Identification of Essential Genes in Streptococcus

scientific article

Phenotypic microarrays suggest Escherichia coli ST131 is not a metabolically distinct lineage of extra-intestinal pathogenic E. coli

scientific article (publication date: 2014)

Quantitative genome-wide methylation analysis of high-grade non-muscle invasive bladder cancer.

scientific article published on March 2016

Quantitative, genome-wide analysis of the DNA methylome in sporadic pituitary adenomas

scientific article

Quantitative, high-resolution epigenetic profiling of CpG loci identifies associations with cord blood plasma homocysteine and birth weight in humans

scientific article

RNA expression of TLR10 in normal equine tissues

scientific article

Sexual Selection and the Adaptive Evolution of Mammalian Ejaculate Proteins

scientific article published on 20 November 2007

Splice-site mutations in the axonemal outer dynein arm docking complex gene CCDC114 cause primary ciliary dyskinesia

scientific article

Synaptic scaffold evolution generated components of vertebrate cognitive complexity.

scientific article

TGF-β superfamily members from the helminth Fasciola hepatica show intrinsic effects on viability and development

scientific article

TP53 copy number expansion is associated with the evolution of increased body size and an enhanced DNA damage response in elephants

scientific article

Targeted NGS gene panel identifies mutations in RSPH1 causing primary ciliary dyskinesia and a common mechanism for ciliary central pair agenesis due to radial spoke defects.

scientific article

The A2 gene of alcelaphine herpesvirus-1 is a transcriptional regulator affecting cytotoxicity in virus-infected T cells but is not required for malignant catarrhal fever induction in rabbits

scientific article

The Cross-Talk between miR-511-3p and C-Type Lectin Receptors on Dendritic Cells Affects Dendritic Cell Function

scientific article published on 22 May 2019

The EFEMP1 gene: a frequent target for epigenetic silencing in multiple human pituitary adenoma subtypes

scientific article published on 6 November 2013

The Logic of Evolution: Review of the Logic of Chance by Eugene V. Koonin

scientific article published in 2012

The Multiple Sclerosis Severity Score: associations with MC1R single nucleotide polymorphisms and host response to ultraviolet radiation

scientific article published on 29 July 2010

The human postsynaptic density shares conserved elements with proteomes of unicellular eukaryotes and prokaryotes

scientific article

The role of positive selection in determining the molecular cause of species differences in disease

scientific article (publication date: 6 October 2008)

Transcriptomic and genomic variants between koala populations reveals underlying genetic components to disorders in a bottlenecked population

scientific article published on 20 February 2021

Transposon insertion mapping with PIMMS - Pragmatic Insertional Mutation Mapping System.

scientific article

Triaging informative cis-regulatory elements for the combinatorial control of temporal gene expression during Plasmodium falciparum intraerythrocytic development

scientific article published on 5 February 2015

Virulence related sequences; insights provided by comparative genomics of Streptococcus uberis of differing virulence.

scientific article published on 23 April 2015

X-linked primary ciliary dyskinesia due to mutations in the cytoplasmic axonemal dynein assembly factor PIH1D3.

scientific article

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