List of works - Richard Emes

Initial sequencing and comparative analysis of the mouse genome

scientific article

Mutations in radial spoke head protein genes RSPH9 and RSPH4A cause primary ciliary dyskinesia with central-microtubular-pair abnormalities

scientific article

Synaptic scaffold evolution generated components of vertebrate cognitive complexity.

scientific article

Evolutionary expansion and anatomical specialization of synapse proteome complexity.

scientific article published on 8 June 2008

Comparison of the genomes of human and mouse lays the foundation of genome zoology

scientific article (publication date: April 2003)

TP53 copy number expansion is associated with the evolution of increased body size and an enhanced DNA damage response in elephants

scientific article

Mutations in ZMYND10, a gene essential for proper axonemal assembly of inner and outer dynein arms in humans and flies, cause primary ciliary dyskinesia

scientific article

Splice-site mutations in the axonemal outer dynein arm docking complex gene CCDC114 cause primary ciliary dyskinesia

scientific article

Mutations in CCDC39 and CCDC40 are the major cause of primary ciliary dyskinesia with axonemal disorganization and absent inner dynein arms

scientific article

Sexual Selection and the Adaptive Evolution of Mammalian Ejaculate Proteins

scientific article published on 20 November 2007

Quantitative, high-resolution epigenetic profiling of CpG loci identifies associations with cord blood plasma homocysteine and birth weight in humans

scientific article

Evolution of synapse complexity and diversity

scientific article published on January 2012

Exome sequencing identifies DYNC2H1 mutations as a common cause of asphyxiating thoracic dystrophy (Jeune syndrome) without major polydactyly, renal or retinal involvement

scientific article (publication date: May 2013)

Control of gene expression in Plasmodium falciparum - ten years on.

scientific article published on 06 December 2008

LINE-1 DNA methylation is inversely correlated with cord plasma homocysteine in man: a preliminary study

scientific article published on 18 August 2009

Mutations in the gene encoding IFT dynein complex component WDR34 cause Jeune asphyxiating thoracic dystrophy

scientific journal article

Evolution of NMDA receptor cytoplasmic interaction domains: implications for organisation of synaptic signalling complexes

scientific article

The role of positive selection in determining the molecular cause of species differences in disease

scientific article (publication date: 6 October 2008)

Targeted NGS gene panel identifies mutations in RSPH1 causing primary ciliary dyskinesia and a common mechanism for ciliary central pair agenesis due to radial spoke defects.

scientific article

X-linked primary ciliary dyskinesia due to mutations in the cytoplasmic axonemal dynein assembly factor PIH1D3.

scientific article

Combined exome and whole-genome sequencing identifies mutations in ARMC4 as a cause of primary ciliary dyskinesia with defects in the outer dynein arm.

scientific article

Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents

scientific article published on April 2004

Genome-wide DNA methylation profiling in rheumatoid arthritis identifies disease-associated methylation changes that are distinct to individual T- and B-lymphocyte populations

scientific article

Evolution of complexity in the zebrafish synapse proteome.

scientific article published on 02 March 2017

Comparative evolutionary genomics of androgen-binding protein genes

scientific article published on 15 July 2004

Quantitative, genome-wide analysis of the DNA methylome in sporadic pituitary adenomas

scientific article

Epigenome-wide profiling identifies significant differences in DNA methylation between matched-pairs of T- and B-lymphocytes from healthy individuals

scientific article

Duplicated paralogous genes subject to positive selection in the genome of Trypanosoma brucei

scientific article

A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome

scientific article published on June 25, 2014

Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus

scientific article

Identification of DNA methylation biomarkers from Infinium arrays

scientific article

Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence

scientific article (publication date: 12 February 2013)

Adaptive evolution of Toll-like receptor 5 in domesticated mammals

scientific article

Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes

scientific article

Genome-wide profiling in treatment-naive early rheumatoid arthritis reveals DNA methylome changes in T and B lymphocytes

scientific article published on 10 November 2015

Virulence related sequences; insights provided by comparative genomics of Streptococcus uberis of differing virulence.

scientific article published on 23 April 2015

Quantitative genome-wide methylation analysis of high-grade non-muscle invasive bladder cancer.

scientific article published on March 2016

Combined influence of gene-specific cord blood methylation and maternal smoking habit on birth weight

scientific article published in February 2013

Multiple groups of endogenous epsilon-like retroviruses conserved across primates.

scientific article

A Trematode Parasite Derived Growth Factor Binds and Exerts Influences on Host Immune Functions via Host Cytokine Receptor Complexes

scientific article

Methylation of the FGFR2 gene is associated with high birth weight centile in humans

scientific article published on January 2014

Knockdown of embryonic myosin heavy chain reveals an essential role in the morphology and function of the developing heart

scientific article

DNA methylation at diagnosis is associated with response to disease-modifying drugs in early rheumatoid arthritis.

scientific article published on 25 November 2016

Hsp-90 and the biology of nematodes

scientific article

Characterisation of retroviruses in the horse genome and their transcriptional activity via transcriptome sequencing.

scientific article published on 4 August 2012

Identifying genes for neuron survival and axon outgrowth in Hirudo medicinalis

scientific article published in January 2004

Make way for the 'next generation': application and prospects for genome-wide, epigenome-specific technologies in endocrine research

scientific article published on 29 May 2012

Analysis of the spatial and temporal arrangement of transcripts over intergenic regions in the human malarial parasite Plasmodium falciparum.

scientific article

A novel member of the let-7 microRNA family is associated with developmental transitions in filarial nematode parasites

scientific article published on 22 April 2015

Comparison of clustering methods for investigation of genome-wide methylation array data

scientific article

List of works by Richard Emes

Initial sequencing and comparative analysis of the mouse genome

Mutations in radial spoke head protein genes RSPH9 and RSPH4A cause primary ciliary dyskinesia with central-microtubular-pair abnormalities

Synaptic scaffold evolution generated components of vertebrate cognitive complexity.

Evolutionary expansion and anatomical specialization of synapse proteome complexity.

Comparison of the genomes of human and mouse lays the foundation of genome zoology

TP53 copy number expansion is associated with the evolution of increased body size and an enhanced DNA damage response in elephants

Mutations in ZMYND10, a gene essential for proper axonemal assembly of inner and outer dynein arms in humans and flies, cause primary ciliary dyskinesia

Splice-site mutations in the axonemal outer dynein arm docking complex gene CCDC114 cause primary ciliary dyskinesia

Mutations in CCDC39 and CCDC40 are the major cause of primary ciliary dyskinesia with axonemal disorganization and absent inner dynein arms

Sexual Selection and the Adaptive Evolution of Mammalian Ejaculate Proteins

Quantitative, high-resolution epigenetic profiling of CpG loci identifies associations with cord blood plasma homocysteine and birth weight in humans

Evolution of synapse complexity and diversity

Exome sequencing identifies DYNC2H1 mutations as a common cause of asphyxiating thoracic dystrophy (Jeune syndrome) without major polydactyly, renal or retinal involvement

Control of gene expression in Plasmodium falciparum - ten years on.

LINE-1 DNA methylation is inversely correlated with cord plasma homocysteine in man: a preliminary study

Mutations in the gene encoding IFT dynein complex component WDR34 cause Jeune asphyxiating thoracic dystrophy

Evolution of NMDA receptor cytoplasmic interaction domains: implications for organisation of synaptic signalling complexes

The role of positive selection in determining the molecular cause of species differences in disease

Targeted NGS gene panel identifies mutations in RSPH1 causing primary ciliary dyskinesia and a common mechanism for ciliary central pair agenesis due to radial spoke defects.

X-linked primary ciliary dyskinesia due to mutations in the cytoplasmic axonemal dynein assembly factor PIH1D3.

Combined exome and whole-genome sequencing identifies mutations in ARMC4 as a cause of primary ciliary dyskinesia with defects in the outer dynein arm.

Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents

Genome-wide DNA methylation profiling in rheumatoid arthritis identifies disease-associated methylation changes that are distinct to individual T- and B-lymphocyte populations

Evolution of complexity in the zebrafish synapse proteome.

Comparative evolutionary genomics of androgen-binding protein genes

Quantitative, genome-wide analysis of the DNA methylome in sporadic pituitary adenomas

Epigenome-wide profiling identifies significant differences in DNA methylation between matched-pairs of T- and B-lymphocytes from healthy individuals

Duplicated paralogous genes subject to positive selection in the genome of Trypanosoma brucei

A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome

Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus

Identification of DNA methylation biomarkers from Infinium arrays

Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence

Adaptive evolution of Toll-like receptor 5 in domesticated mammals

Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes

Genome-wide profiling in treatment-naive early rheumatoid arthritis reveals DNA methylome changes in T and B lymphocytes

Virulence related sequences; insights provided by comparative genomics of Streptococcus uberis of differing virulence.

Quantitative genome-wide methylation analysis of high-grade non-muscle invasive bladder cancer.

Combined influence of gene-specific cord blood methylation and maternal smoking habit on birth weight

Multiple groups of endogenous epsilon-like retroviruses conserved across primates.

A Trematode Parasite Derived Growth Factor Binds and Exerts Influences on Host Immune Functions via Host Cytokine Receptor Complexes

Methylation of the FGFR2 gene is associated with high birth weight centile in humans

Knockdown of embryonic myosin heavy chain reveals an essential role in the morphology and function of the developing heart

DNA methylation at diagnosis is associated with response to disease-modifying drugs in early rheumatoid arthritis.

Hsp-90 and the biology of nematodes

Characterisation of retroviruses in the horse genome and their transcriptional activity via transcriptome sequencing.

Identifying genes for neuron survival and axon outgrowth in Hirudo medicinalis

Make way for the 'next generation': application and prospects for genome-wide, epigenome-specific technologies in endocrine research

Analysis of the spatial and temporal arrangement of transcripts over intergenic regions in the human malarial parasite Plasmodium falciparum.

A novel member of the let-7 microRNA family is associated with developmental transitions in filarial nematode parasites

Comparison of clustering methods for investigation of genome-wide methylation array data