List of works - Baolin Wu

A general statistic to test an optimally weighted combination of common and/or rare variants

scientific article published on 09 September 2019

A high productivity/low maintenance approach to high-performance computation for biomedicine: four case studies

scientific article

A note on statistical method for genotype calling of high-throughput SNP arrays

scientific article published on January 2013

A permutation test approach to the choice of sizekfor the nearest neighbors classifier

A role for MEIS1 in MLL-fusion gene leukemia ⬇️

scientific article published on 24 December 2008

A statistical method for identifying differential gene-gene co-expression patterns

scientific article published in July 2004

Analysis of 75 Candidate SNPs Associated With Acute Rejection in Kidney Transplant Recipients: Validation of rs2910164 in MicroRNA MIR146A

scientific article published on 01 August 2019

Attempted validation of 44 reported SNPs associated with tacrolimus troughs in a cohort of kidney allograft recipients

scientific article published on 10 January 2018

CRISPR/Cas9 Genetic Modification of CYP3A5 *3 in HuH-7 Human Hepatocyte Cell Line Leads to Cell Lines with Increased Midazolam and Tacrolimus Metabolism

scientific article

Cancer outlier differential gene expression detection

scientific article published on 4 October 2006

Cerebral malaria in children is associated with long-term cognitive impairment

scientific article published on 09 June 2008

Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data

scientific article

Concept and design of a genome-wide association genotyping array tailored for transplantation-specific studies

scientific article

Detecting and aligning peaks in mass spectrometry data with applications to MALDI.

scientific article

Detection of DNA copy number alterations using penalized least squares regression

scientific article published on 30 August 2005

Differential gene expression detection and sample classification using penalized linear regression models

scientific article published on 13 December 2005

Differential gene expression detection using penalized linear regression models: the improved SAM statistics.

scientific article

Differentially expressed gene transcripts using RNA sequencing from the blood of immunosuppressed kidney allograft recipients

scientific article published on 6 May 2015

Empirical null distribution based modeling of multi-class differential gene expression detection

scientific article published on 21 November 2012

Fast and Accurate Genome-Wide Association Test of Multiple Quantitative Traits.

scientific article

Functional group-based linkage analysis of gene expression trait loci

scientific article

Genetic Variants Associated With Immunosuppressant Pharmacokinetics and Adverse Effects in the DeKAF Genomics Genome-wide Association Studies

scientific article published on 01 June 2019

Genome-wide association study identifies the common variants in CYP3A4 and CYP3A5 responsible for variation in tacrolimus trough concentration in Caucasian kidney transplant recipients

scientific article

Genome-wide association test of multiple continuous traits using imputed SNPs.

scientific article published on January 2017

Identification of genetic variants associated with tacrolimus metabolism in kidney transplant recipients by extreme phenotype sampling and next generation sequencing

scientific article published on 16 November 2018

Information assessment on predicting protein-protein interactions

scientific article

Integrate multiple traits to detect novel trait-gene association using GWAS summary data with an adaptive test approach

scientific article published on 01 July 2019

LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments

scientific article

Likelihood-Based Approach to Gene Set Enrichment Analysis with a Finite Mixture Model

scientific article

Malignant transformation initiated by Mll-AF9: gene dosage and critical target cells

scientific article published on May 2008

Meis1 maintains stemness signature in MLL-AF9 leukemia

scientific article published on April 2010

Minimally invasive versus open Roux-en-Y gastric bypass: effect on immune effector cells

scientific article published on 30 August 2008

Mining the structural genomics pipeline: identification of protein properties that affect high-throughput experimental analysis

scientific article published in February 2004

Multi-group cancer outlier differential gene expression detection

article

Multiple peak alignment in sequential data analysis: a scale-space-based approach

scientific article

Multivariate relationships between peripheral inflammatory marker subtypes and cognitive and brain structural measures in psychosis

scientific article published on 15 October 2020

Network propagation models for gene selection

article

Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis ⬇️

scientific article published on 23 December 2015

Network-based survival analysis reveals subnetwork signatures for predicting outcomes of ovarian cancer treatment

scientific article

On Efficient and Accurate Calculation of Significance P-Values for Sequence Kernel Association Testing of Variant Set.

scientific article published on 12 January 2016

On Sample Size and Power Calculation for Variant Set-Based Association Tests

scientific article published on February 2016

On the geometric modeling approach to empirical null distribution estimation for empirical Bayes modeling of multiple hypothesis testing ⬇️

scientific article published on December 22, 2012

PSMIX: an R package for population structure inference via maximum likelihood method

scientific article

Parametric and nonparametric FDR estimation revisited

scientific article published in September 2006

Penalized Fieller's confidence interval for the ratio of bivariate normal means

scientific article published on 31 August 2020

Pharmacogenomics in kidney transplant recipients and potential for integration into practice

scientific article published on 14 July 2020

Pleiotropy informed adaptive association test of multiple traits using genome-wide association study summary data

scientific article published on 02 August 2019

Powerful and efficient SNP-set association tests across multiple phenotypes using GWAS summary data

scientific article published on 01 April 2019

Powerful statistical method to detect disease-associated genes using publicly available genome-wide association studies summary data

scientific article published on 07 August 2019

Protein expression profile of rat type two alveolar epithelial cells during hyperoxic stress and recovery

scientific article

Proteome Profiling in Lung Injury after Hematopoietic Stem Cell Transplantation

scientific article published on 04 May 2016

Proteome of human calcium kidney stones

scientific article published on 14 August 2010

Proteomic profiles in acute respiratory distress syndrome differentiates survivors from non-survivors

scientific article

Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions

scientific article (publication date: 17 June 2010)

Racial/Ethnic disparities in the use of nicotine replacement therapy and quit ratios in lifetime smokers ages 25 to 44 years

scientific article published on 26 June 2008

Reader reaction on the fast small-sample kernel independence test for microbiome community-level association analysis

scientific article published on 29 November 2017

Reader reaction on the generalized Kruskal-Wallis test for genetic association studies incorporating group uncertainty

scientific article published on 28 October 2014

Robust and efficient identification of biomarkers by classifying features on graphs

scientific article published on 24 July 2008

Sequence Kernel Association Analysis of Rare Variant Set Based on the Marginal Regression Model for Binary Traits

scientific article

Sequence Kernel Association Test of Multiple Continuous Phenotypes

scientific article

Signed network propagation for detecting differential gene expressions and DNA copy number variations

article

Sparse cluster analysis of large-scale discrete variables with application to single nucleotide polymorphism data

scientific article

Sparse regularized discriminant analysis with application to microarrays

scientific article

Statistical methods for association tests of multiple continuous traits in genome-wide association studies

scientific article published on 7 April 2015

Statistical methods to detect novel genetic variants using publicly available GWAS summary data

scientific article published in March 2018

Statistical test with sample size and power calculation for paired repeated measures designs of method comparison studies: Supplementary Materials

Tacrolimus Elimination in Four Patients With a CYP3A53/3 CYP3A422/22 Genotype Combination

Tacrolimus Trough and Dose Intra-Patient Variability and CYP3A5 Genotype: Effects on Acute Rejection and Graft Failure in European American and African American Kidney Transplant Recipients

scientific article published on 31 October 2018

Tacrolimus troughs and genetic determinants of metabolism in kidney transplant recipients: A comparison of four ancestry groups

scientific article published on 13 May 2019

Thoracoscopic versus thoracotomy approaches to lobectomy: differential impairment of cellular immunity.

scientific article

List of works by Baolin Wu

A general statistic to test an optimally weighted combination of common and/or rare variants

A high productivity/low maintenance approach to high-performance computation for biomedicine: four case studies

A note on statistical method for genotype calling of high-throughput SNP arrays

A permutation test approach to the choice of sizekfor the nearest neighbors classifier

A role for MEIS1 in MLL-fusion gene leukemia ⬇️

A statistical method for identifying differential gene-gene co-expression patterns

Analysis of 75 Candidate SNPs Associated With Acute Rejection in Kidney Transplant Recipients: Validation of rs2910164 in MicroRNA MIR146A

Attempted validation of 44 reported SNPs associated with tacrolimus troughs in a cohort of kidney allograft recipients

CRISPR/Cas9 Genetic Modification of CYP3A5 *3 in HuH-7 Human Hepatocyte Cell Line Leads to Cell Lines with Increased Midazolam and Tacrolimus Metabolism

Cancer outlier differential gene expression detection

Cerebral malaria in children is associated with long-term cognitive impairment

Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data

Concept and design of a genome-wide association genotyping array tailored for transplantation-specific studies

Detecting and aligning peaks in mass spectrometry data with applications to MALDI.

Detection of DNA copy number alterations using penalized least squares regression

Differential gene expression detection and sample classification using penalized linear regression models

Differential gene expression detection using penalized linear regression models: the improved SAM statistics.

Differentially expressed gene transcripts using RNA sequencing from the blood of immunosuppressed kidney allograft recipients

Empirical null distribution based modeling of multi-class differential gene expression detection

Fast and Accurate Genome-Wide Association Test of Multiple Quantitative Traits.

Functional group-based linkage analysis of gene expression trait loci

Genetic Variants Associated With Immunosuppressant Pharmacokinetics and Adverse Effects in the DeKAF Genomics Genome-wide Association Studies

Genome-wide association study identifies the common variants in CYP3A4 and CYP3A5 responsible for variation in tacrolimus trough concentration in Caucasian kidney transplant recipients

Genome-wide association test of multiple continuous traits using imputed SNPs.

Identification of genetic variants associated with tacrolimus metabolism in kidney transplant recipients by extreme phenotype sampling and next generation sequencing

Information assessment on predicting protein-protein interactions

Integrate multiple traits to detect novel trait-gene association using GWAS summary data with an adaptive test approach

LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments

Likelihood-Based Approach to Gene Set Enrichment Analysis with a Finite Mixture Model

Malignant transformation initiated by Mll-AF9: gene dosage and critical target cells

Meis1 maintains stemness signature in MLL-AF9 leukemia

Minimally invasive versus open Roux-en-Y gastric bypass: effect on immune effector cells

Mining the structural genomics pipeline: identification of protein properties that affect high-throughput experimental analysis

Multi-group cancer outlier differential gene expression detection

Multiple peak alignment in sequential data analysis: a scale-space-based approach

Multivariate relationships between peripheral inflammatory marker subtypes and cognitive and brain structural measures in psychosis

Network propagation models for gene selection

Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis ⬇️

Network-based survival analysis reveals subnetwork signatures for predicting outcomes of ovarian cancer treatment

On Efficient and Accurate Calculation of Significance P-Values for Sequence Kernel Association Testing of Variant Set.

On Sample Size and Power Calculation for Variant Set-Based Association Tests

On the geometric modeling approach to empirical null distribution estimation for empirical Bayes modeling of multiple hypothesis testing ⬇️

PSMIX: an R package for population structure inference via maximum likelihood method

Parametric and nonparametric FDR estimation revisited

Penalized Fieller's confidence interval for the ratio of bivariate normal means

Pharmacogenomics in kidney transplant recipients and potential for integration into practice

Pleiotropy informed adaptive association test of multiple traits using genome-wide association study summary data

Powerful and efficient SNP-set association tests across multiple phenotypes using GWAS summary data

Powerful statistical method to detect disease-associated genes using publicly available genome-wide association studies summary data

Protein expression profile of rat type two alveolar epithelial cells during hyperoxic stress and recovery

Proteome Profiling in Lung Injury after Hematopoietic Stem Cell Transplantation

Proteome of human calcium kidney stones

Proteomic profiles in acute respiratory distress syndrome differentiates survivors from non-survivors

Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions

Racial/Ethnic disparities in the use of nicotine replacement therapy and quit ratios in lifetime smokers ages 25 to 44 years

Reader reaction on the fast small-sample kernel independence test for microbiome community-level association analysis

Reader reaction on the generalized Kruskal-Wallis test for genetic association studies incorporating group uncertainty

Robust and efficient identification of biomarkers by classifying features on graphs

Sequence Kernel Association Analysis of Rare Variant Set Based on the Marginal Regression Model for Binary Traits

Sequence Kernel Association Test of Multiple Continuous Phenotypes

Signed network propagation for detecting differential gene expressions and DNA copy number variations

Sparse cluster analysis of large-scale discrete variables with application to single nucleotide polymorphism data

Sparse regularized discriminant analysis with application to microarrays

Statistical methods for association tests of multiple continuous traits in genome-wide association studies

Statistical methods to detect novel genetic variants using publicly available GWAS summary data

Statistical test with sample size and power calculation for paired repeated measures designs of method comparison studies: Supplementary Materials

Tacrolimus Elimination in Four Patients With a CYP3A5*3/*3 CYP3A4*22/*22 Genotype Combination

Tacrolimus Trough and Dose Intra-Patient Variability and CYP3A5 Genotype: Effects on Acute Rejection and Graft Failure in European American and African American Kidney Transplant Recipients

Tacrolimus troughs and genetic determinants of metabolism in kidney transplant recipients: A comparison of four ancestry groups

Thoracoscopic versus thoracotomy approaches to lobectomy: differential impairment of cellular immunity.

Tacrolimus Elimination in Four Patients With a CYP3A53/3 CYP3A422/22 Genotype Combination