List of works - Miguel Andrade

A mitochondria-K+ channel axis is suppressed in cancer and its normalization promotes apoptosis and inhibits cancer growth

scientific article

A role for GPx3 in activity of normal and leukemia stem cells

scientific article

Adding protein context to the human protein-protein interaction network to reveal meaningful interactions.

scientific article

Aggregation of polyQ-extended proteins is promoted by interaction with their natural coiled-coil partners

scientific article published on 11 March 2013

Amplification of the Gene Ontology annotation of Affymetrix probe sets.

scientific article published on 20 March 2006

Analysis of Huntington's Disease Modifiers Using the Hyperbolic Mapping of the Protein Interaction Network

scientific article published on 23 May 2022

Annotation and Analysis of 3902 Odorant Receptor Protein Sequences from 21 Insect Species Provide Insights into the Evolution of Odorant Receptor Gene Families in Solitary and Social Insects

scientific article published on 20 May 2022

Assessing the reliability of gene expression measurements in very-low-numbers of human monocyte-derived macrophages

scientific article published on 29 November 2019

Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality

scientific article published in 2022

Bioinformatics: from genome data to biological knowledge.

scientific article published in December 1997

Comparative genomics identification of a novel set of temporally regulated hedgehog target genes in the retina

scientific article published on 16 January 2012

Computational approaches to discovering noncoding RNA.

scientific article published on 03 May 2012

DNA methylation protects hematopoietic stem cell multipotency from myeloerythroid restriction.

scientific article published on 4 October 2009

Development and application of a DNA microarray-based yeast two-hybrid system

scientific article

Dynamics of a Protein Interaction Network Associated to the Aggregation of polyQ-Expanded Ataxin-1

scientific article published on 25 September 2020

Evolution-guided evaluation of the inverted terminal repeats of the synthetic transposon Sleeping Beauty

scientific article published in Scientific Reports

Evolutionary Study of Disorder in Protein Sequences

scientific article published on 06 October 2020

Expression of protein elongation factor eEF1A2 predicts favorable outcome in breast cancer.

scientific article published on 9 August 2006

Function and Evolution of Nematode RNAi Pathways

scientific article published on 15 January 2019

Functional evidence of post-transcriptional regulation by pseudogenes.

scientific article published on 27 July 2011

Gene annotation from scientific literature using mappings between keyword systems

scientific article published on April 2004

HEAT repeats in the Huntington's disease protein

scientific article

HIPPIE: Integrating protein interaction networks with experiment based quality scores.

scientific article

Identification of gene 3' ends by automated EST cluster analysis

scholarly article

Identification of human proteins that modify misfolding and proteotoxicity of pathogenic ataxin-1

scientific article

Identification of novel stem cell markers using gap analysis of gene expression data.

scientific article

Identification of outer membrane proteins of Mycobacterium tuberculosis

scientific journal article

K2D2: estimation of protein secondary structure from circular dichroism spectra.

scientific article

Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets

scientific article published in PLoS ONE

Loss of Lrp2 in zebrafish disrupts pronephric tubular clearance but not forebrain development.

scientific article

Loss of fish actinotrichia proteins and the fin-to-limb transition.

scientific article

MAGA: A Supervised Method to Detect Motifs From Annotated Groups in Alignments

scientific article published on 29 April 2020

Mining the literature: new methods to exploit keyword profiles ⬇️

scientific article published on October 30, 2012

Mitochondrial carriers and pores: key regulators of the mitochondrial apoptotic program?

scientific article

Mitochondrial vesicles: an ancient process providing new links to peroxisomes.

scientific article published on 05 May 2009

NHC-gold compounds mediate immune suppression through induction of AHR-TGFβ1 signalling in vitro and in scurfy mice

scientific article published on 03 January 2020

PDBpaint, a visualization webservice to tag protein structures with sequence annotations.

scientific article

PU.1 level-directed chromatin structure remodeling at the Irf8 gene drives dendritic cell commitment.

scientific article published on 25 April 2013

Periostin shows increased evolutionary plasticity in its alternatively spliced region

scientific article

PolyX2: Fast Detection of Homorepeats in Large Protein Datasets

publication published on 25 April 2022

Preimplantation development regulatory pathway construction through a text-mining approach.

scientific article

Prioritization of candidate disease genes for metabolic syndrome by computational analysis of its defining phenotypes

scientific article published on 8 July 2008

QiSampler: evaluation of scoring schemes for high-throughput datasets using a repetitive sampling strategy on gold standards.

scientific article

Ranking the whole MEDLINE database according to a large training set using text indexing

scientific article

Recognition of 2'-O-methylated 3'-end of piRNA by the PAZ domain of a Piwi protein

scientific article

Resident endothelial precursors in muscle, adipose, and dermis contribute to postnatal vasculogenesis

scientific article published on 06 September 2007

Structured Tandem Repeats in Protein Interactions

scientific article published in 2024

Systematic interaction network filtering identifies CRMP1 as a novel suppressor of huntingtin misfolding and neurotoxicity

scientific article published on May 2015

TAF-ChIP: an ultra-low input approach for genome-wide chromatin immunoprecipitation assay

scientific article published on 22 July 2019

The SUMO protease SENP5 is required to maintain mitochondrial morphology and function

scientific article published on 06 March 2007

The soluble intracellular domain of megalin does not affect renal proximal tubular function in vivo.

scientific article published on 9 June 2010

Transcriptional profiling of skeletal muscle reveals factors that are necessary to maintain satellite cell integrity during ageing.

scientific article

Using cited references to improve the retrieval of related biomedical documents

scientific article (publication date: 27 March 2013)

List of works by Miguel Andrade

A mitochondria-K+ channel axis is suppressed in cancer and its normalization promotes apoptosis and inhibits cancer growth

A role for GPx3 in activity of normal and leukemia stem cells

Adding protein context to the human protein-protein interaction network to reveal meaningful interactions.

Aggregation of polyQ-extended proteins is promoted by interaction with their natural coiled-coil partners

Amplification of the Gene Ontology annotation of Affymetrix probe sets.

Analysis of Huntington's Disease Modifiers Using the Hyperbolic Mapping of the Protein Interaction Network

Annotation and Analysis of 3902 Odorant Receptor Protein Sequences from 21 Insect Species Provide Insights into the Evolution of Odorant Receptor Gene Families in Solitary and Social Insects

Assessing the reliability of gene expression measurements in very-low-numbers of human monocyte-derived macrophages

Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality

Bioinformatics: from genome data to biological knowledge.

Comparative genomics identification of a novel set of temporally regulated hedgehog target genes in the retina

Computational approaches to discovering noncoding RNA.

DNA methylation protects hematopoietic stem cell multipotency from myeloerythroid restriction.

Development and application of a DNA microarray-based yeast two-hybrid system

Dynamics of a Protein Interaction Network Associated to the Aggregation of polyQ-Expanded Ataxin-1

Evolution-guided evaluation of the inverted terminal repeats of the synthetic transposon Sleeping Beauty

Evolutionary Study of Disorder in Protein Sequences

Expression of protein elongation factor eEF1A2 predicts favorable outcome in breast cancer.

Function and Evolution of Nematode RNAi Pathways

Functional evidence of post-transcriptional regulation by pseudogenes.

Gene annotation from scientific literature using mappings between keyword systems

HEAT repeats in the Huntington's disease protein

HIPPIE: Integrating protein interaction networks with experiment based quality scores.

Identification of gene 3' ends by automated EST cluster analysis

Identification of human proteins that modify misfolding and proteotoxicity of pathogenic ataxin-1

Identification of novel stem cell markers using gap analysis of gene expression data.

Identification of outer membrane proteins of Mycobacterium tuberculosis

K2D2: estimation of protein secondary structure from circular dichroism spectra.

Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets

Loss of Lrp2 in zebrafish disrupts pronephric tubular clearance but not forebrain development.

Loss of fish actinotrichia proteins and the fin-to-limb transition.

MAGA: A Supervised Method to Detect Motifs From Annotated Groups in Alignments

Mining the literature: new methods to exploit keyword profiles ⬇️

Mitochondrial carriers and pores: key regulators of the mitochondrial apoptotic program?

Mitochondrial vesicles: an ancient process providing new links to peroxisomes.

NHC-gold compounds mediate immune suppression through induction of AHR-TGFβ1 signalling in vitro and in scurfy mice

PDBpaint, a visualization webservice to tag protein structures with sequence annotations.

PU.1 level-directed chromatin structure remodeling at the Irf8 gene drives dendritic cell commitment.

Periostin shows increased evolutionary plasticity in its alternatively spliced region

PolyX2: Fast Detection of Homorepeats in Large Protein Datasets

Preimplantation development regulatory pathway construction through a text-mining approach.

Prioritization of candidate disease genes for metabolic syndrome by computational analysis of its defining phenotypes

QiSampler: evaluation of scoring schemes for high-throughput datasets using a repetitive sampling strategy on gold standards.

Ranking the whole MEDLINE database according to a large training set using text indexing

Recognition of 2'-O-methylated 3'-end of piRNA by the PAZ domain of a Piwi protein

Resident endothelial precursors in muscle, adipose, and dermis contribute to postnatal vasculogenesis

Structured Tandem Repeats in Protein Interactions

Systematic interaction network filtering identifies CRMP1 as a novel suppressor of huntingtin misfolding and neurotoxicity

TAF-ChIP: an ultra-low input approach for genome-wide chromatin immunoprecipitation assay

The SUMO protease SENP5 is required to maintain mitochondrial morphology and function

The soluble intracellular domain of megalin does not affect renal proximal tubular function in vivo.

Transcriptional profiling of skeletal muscle reveals factors that are necessary to maintain satellite cell integrity during ageing.

Using cited references to improve the retrieval of related biomedical documents