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Authors whose works are in public domain in at least one jurisdiction

List of works by Iñaki Ruiz-Trillo

A Genomic Survey of HECT Ubiquitin Ligases in Eukaryotes Reveals Independent Expansions of the HECT System in Several Lineages ⬇️

scientific article published on January 1, 2013

A broad genomic survey reveals multiple origins and frequent losses in the evolution of respiratory hemerythrins and hemocyanins.

scientific article

A genomic survey shows that the haloarchaeal type tyrosyl tRNA synthetase is not a synapomorphy of opisthokonts

scientific article

A global metabarcoding analysis expands molecular diversity of Platyhelminthes and reveals novel early-branching clades

scientific article published on 11 September 2019

A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians

scientific article

A phylogenomic investigation into the origin of metazoa.

scientific article

A robust molecular phylogeny of the Tricladida (Platyhelminthes: Seriata) with a discussion on morphological synapomorphies ⬇️

scientific article

A unicellular relative of animals generates a layer of polarized cells by actomyosin-dependent cellularization

scientific article published on 28 October 2019

A unicellular relative of animals generates an epithelium-like cell layer by actomyosin-dependent cellularization

Acoel Flatworms: Earliest Extant Bilaterian Metazoans, Not Members of Platyhelminthes

scientific article

Acoelomorpha: earliest branching bilaterians or deuterostomes?

Alternative Methods for Concatenation of Core Genes Indicate a Lack of Resolution in Deep Nodes of the Prokaryotic Phylogeny

article

Ancient origin of the integrin-mediated adhesion and signaling machinery

scientific article

Animals and Their Unicellular Ancestors

Antifungal and antiprotozoal green amino acid-based rhamnolipids: Mode of action, antibiofilm efficiency and selective activity against resistant Candida spp. strains and Acanthamoeba castellanii

scientific article published on 26 May 2020

Capsaspora owczarzaki

scientific article published in September 2017

Capsaspora owczarzaki is an independent opisthokont lineage.

scientific article published in November 2004

Cell cycle transcriptomics of Capsaspora provides insights into the evolution of cyclin-CDK machinery

scientific article published on 16 March 2020

Characterization of a group I Nme protein of Capsaspora owczarzaki-a close unicellular relative of animals

scientific article published on 5 February 2018

Codon adaptation to tRNAs with Inosine modification at position 34 is widespread among Eukaryotes and present in two Bacterial phyla.

scientific article

Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals

scientific article

Concepts of the last eukaryotic common ancestor

scientific article published on 18 February 2019

Correction: A unicellular relative of animals generates a layer of polarized cells by actomyosin-dependent cellularization

scientific article published on 19 June 2020

Corrigendum to: Gene Similarity Networks Unveil a Potential Novel Unicellular Group Closely Related to Animals from the Tara Oceans Expedition

scientific article published on 3 August 2021

Decoupling of Nuclear Division Cycles and Cell Size during the Coenocytic Growth of the Ichthyosporean Sphaeroforma arctica

scientific article

Decoupling of the nuclear division cycle and cell size control in the coenocytic cycle of the ichthyosporean Sphaeroforma arctica

Development of ichthyosporeans sheds light on the origin of metazoan multicellularity

scientific article published on 18 January 2013

Divergent genomic trajectories predate the origin of animals and fungi

Diversity and distribution of unicellular opisthokonts along the European coast analysed using high-throughput sequencing

scientific article published on 30 December 2014

Dynamics of genomic innovation in the unicellular ancestry of animals

scientific article published on 20 July 2017

Earliest Holozoan expansion of phosphotyrosine signaling

scientific article published on 3 December 2013

Early evolution of the T-box transcription factor family

scientific article published on 16 September 2013

Environmental survey meta-analysis reveals hidden diversity among unicellular opisthokonts

scientific article

Evaluation of single-cell genomics to address evolutionary questions using three SAGs of the choanoflagellate Monosiga brevicollis

scientific article published on 8 September 2017

Evolution and Classification of the T-Box Transcription Factor Family

scientific article published on 25 July 2016

Evolution and classification of myosins, a paneukaryotic whole-genome approach

scientific article published on February 2014

Evolution of a histone variant involved in compartmental regulation of NAD metabolism

scientific article published in December 2021

Evolution of the MAGUK protein gene family in premetazoan lineages

scientific article

Expression Atlas of the Deubiquitinating Enzymes in the Adult Mouse Retina, Their Evolutionary Diversification and Phenotypic Roles

scientific article

Faculty of 1000 evaluation for Complex archaea that bridge the gap between prokaryotes and eukaryotes

Faculty of 1000 evaluation for Xenacoelomorpha is the sister group to Nephrozoa

Forward genetics for back-in-time questions

scientific article

Gene similarity networks unveil a potential novel unicellular group closely related to animals from the Tara Oceans expedition

scientific article published on 13 June 2020

Genetic tool development in marine protists: emerging model organisms for experimental cell biology

scientific article published on 06 April 2020

Genomic survey of premetazoans shows deep conservation of cytoplasmic tyrosine kinases and multiple radiations of receptor tyrosine kinases.

scientific article published in May 2012

Hidden diversity of Acoelomorpha revealed through metabarcoding

scientific article published on September 2016

High-Throughput Proteomics Reveals the Unicellular Roots of Animal Phosphosignaling and Cell Differentiation

scientific article

Insights into the evolutionary origin and genome architecture of the unicellular opisthokonts Capsaspora owczarzaki and Sphaeroforma arctica

scientific article

Insights into the origin of metazoan filopodia and microvilli

scientific article published on 14 June 2013

Integrin-Mediated Adhesion in the Unicellular Holozoan Capsaspora owczarzaki

scientific article published on 22 August 2020

Integrin-mediated adhesion complex: Cooption of signaling systems at the dawn of Metazoa

scientific article published on September 2010

Lack of Csk-mediated negative regulation in a unicellular SRC kinase

scientific article published in October 2012

Losing Complexity: The Role of Simplification in Macroevolution

scientific article published on 19 May 2016

Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity

scientific article

Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity

scholarly article (2018)

Mitochondrial genome data support the basal position of Acoelomorpha and the polyphyly of the Platyhelminthes

scientific article

Molecular phylogeny of unikonts: new insights into the position of apusomonads and ancyromonads and the internal relationships of opisthokonts

scientific article

New genomes, new taxa and deep questions in the eukaryotic tree of life: a meeting report on the EMBO comparative genomics conference ⬇️

scientific article published on November 23, 2011

Novel Diversity of Deeply Branching Holomycota and Unicellular Holozoans Revealed by Metabarcoding in Middle Paraná River, Argentina

scientific article published in 2018

Novel roles of plant RETINOBLASTOMA-RELATED (RBR) protein in cell proliferation and asymmetric cell division

scientific article

Origin Recognition Complex (ORC) Evolution Is Influenced by Global Gene Duplication/Loss Patterns in Eukaryotic Genomes

scientific article published on 01 February 2020

Origin and evolution of lysyl oxidases

scientific article

Origin of exon skipping-rich transcriptomes in animals driven by evolution of gene architecture

article

Parvularia atlantis gen. et sp. nov., a Nucleariid Filose Amoeba (Holomycota, Opisthokonta).

scientific article published on 25 July 2017

Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains

scientific article

Phylogenomic evidence for a myxococcal contribution to the mitochondrial fatty acid beta-oxidation

scientific article

Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi

scientific article

Premetazoan ancestry of the Myc-Max network

scientific article

Premetazoan origin of the hippo signaling pathway

scientific article

Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology

scientific article published on 15 April 2020

Reconstruction of protein domain evolution using single-cell amplified genomes of uncultured choanoflagellates sheds light on the origin of animals

scientific article published on 07 October 2019

Regulated aggregative multicellularity in a close unicellular relative of metazoa

scientific article published on 24 December 2013

Regulation of sedimentation rate shapes the evolution of multicellularity in a close unicellular relative of animals

scientific article published on 29 March 2022

Rel/NF-κB Transcription Factors Emerged at the Onset of Opisthokonts

scientific article published in January 2022

Reticulate evolution in eukaryotes: Origin and evolution of the nitrate assimilation pathway

scientific article published on 21 February 2019

Reticulate evolution in eukaryotes: origin and evolution of the nitrate assimilation pathway

Revision of the Capsaspora genome using read mating information adjusts the view on premetazoan genome

scientific article published on 25 December 2018

Revisiting the phylogenetic position of Caullerya mesnili (Ichthyosporea), a common Daphnia parasite, based on 22 protein-coding genes

scientific article published on 17 June 2020

Sawyeria marylandensis (Heterolobosea) has a hydrogenosome with novel metabolic properties

scientific article published on 29 October 2010

Stable transfection in protist Corallochytrium limacisporum identifies novel cellular features among unicellular animals relatives

scientific article published in September 2021

Sterol and genomic analyses validate the sponge biomarker hypothesis

scientific article

Sterol metabolism in the filasterean Capsaspora owczarzaki has features that resemble both fungi and animals

scientific article

The Capsaspora genome reveals a complex unicellular prehistory of animals

scientific article

The Diversity of Mitochondrion-Related Organelles Amongst Eukaryotic Microbes

The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity

scientific article

The Expansion of Inosine at the Wobble Position of tRNAs, and Its Role in the Evolution of Proteomes

scientific article published on 01 April 2019

The Mysterious Evolutionary Origin for the GNE Gene and the Root of Bilateria ⬇️

scientific article published on May 25, 2011

The Nemertodermatida are basal bilaterians and not members of the Platyhelminthes

scientific article published in 2002

The eukaryotic ancestor had a complex ubiquitin signaling system of archaeal origin

scientific article

The evolution of the GPCR signaling system in eukaryotes: modularity, conservation, and the transition to metazoan multicellularity

scientific article published on March 2014

The evolutionary history of lysine biosynthesis pathways within eukaryotes

scientific article published on 11 August 2009

The origin of Metazoa: a unicellular perspective.

scientific article published on 8 May 2017

The origin of animals: an ancestral reconstruction of the unicellular-to-multicellular transition

scientific article published in February 2021

The origins of multicellularity: a multi-taxon genome initiative

scientific article published in February 2007

The others: our biased perspective of eukaryotic genomes

scientific article

Towards understanding the origin of animal development

scientific article published on 03 December 2020

Tracing the Evolutionary History of Inositol, 1, 4, 5-Trisphosphate Receptor: Insights from Analyses of Capsaspora owczarzaki Ca2+ Release Channel Orthologs ⬇️

scientific article

Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages

scientific article

Transfection of Capsaspora owczarzaki, a close unicellular relative of animals

scientific article

Txikispora philomaios n. sp., n. g., a micro‐eukaryotic pathogen of amphipods, reveals parasitism and hidden diversity in Class Filasterea ⬇️

scientific article published on 27 December 2021

Unexpected repertoire of metazoan transcription factors in the unicellular holozoan Capsaspora owczarzaki

scientific article

Unicellular Origin of the Animal MicroRNA Machinery

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