Search filters

List of works by Rob Ewing

A Protein Interaction between β-Catenin and Dnmt1 Regulates Wnt Signaling and DNA Methylation in Colorectal Cancer Cells.

scientific article

A Web Resource for Improved Analysis of AP-MS Protein Interaction Data

scientific article published in May 2013

A semantic proteomics dashboard (SemPoD) for data management in translational research

scientific article (publication date: 2012)

Alternate wiring of a KNOXI genetic network underlies differences in leaf development of A. thaliana and C. hirsuta

scientific article

An 85-kb tandem triplication in the slow Wallerian degeneration (Wlds) mouse

scientific article

Comparative analysis of the Arabidopsis and rice expressed sequence tag (EST) sets.

scientific article published in January 1999

Computational framework for analysis of prey-prey associations in interaction proteomics identifies novel human protein-protein interactions and networks

scientific article published on 21 August 2012

DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization

scientific article

DNA and chromatin modification networks distinguish stem cell pluripotent ground states.

scientific article

DNMT1 stability is regulated by proteins coordinating deubiquitination and acetylation-driven ubiquitination

scientific article

Deep proteomic analysis of Dnmt1 mutant/hypomorphic colorectal cancer cells reveals dysregulation of epithelial-mesenchymal transition and subcellular re-localization of Beta-Catenin

scientific article published on 26 August 2019

Design and analysis of quantitative differential proteomics investigations using LC-MS technology

scientific article published in February 2008

Differential analysis of membrane proteins in mouse fore- and hindbrain using a label-free approach

scientific article published in October 2006

Discovery and scoring of protein interaction subnetworks discriminative of late stage human colon cancer

scientific article published on 19 December 2008

ELF3 is an antagonist of oncogenic-signalling-induced expression of EMT-TF ZEB1

scientific article published on 27 August 2018

EST databases as multi-conditional gene expression datasets

scientific article

Emerging applications for phospho-proteomics in cancer molecular therapeutics

scientific article published on 23 June 2006

Enhanced energy metabolism contributes to the extended life span of calorie-restricted Caenorhabditis elegans

scientific article

Expression profile analysis of the low-oxygen response in Arabidopsis root cultures

article

Gain of interaction with IRS1 by p110α-helical domain mutants is crucial for their oncogenic functions

scientific article

How do oncoprotein mutations rewire protein-protein interaction networks?

scientific article

Human Proteinpedia enables sharing of human protein data

scientific article

Human biomarker discovery and predictive models for disease progression for idiopathic pneumonia syndrome following allogeneic stem cell transplantation

scientific article

Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes

scientific article

Identifying novel protein complexes in cancer cells using epitope-tagging of endogenous human genes and affinity-purification mass spectrometry.

scientific article published on 7 November 2012

Integrated analysis of the Wnt responsive proteome in human cells reveals diverse and cell-type specific networks.

scientific article published on January 2014

Integrative transcriptomic and proteomic study of Zika viral infection reveals potential mechanisms for oncolytic therapy in neuroblastoma

scientific article published in 2023

Large-scale mapping of human protein-protein interactions by mass spectrometry

scientific article

Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression

scientific article

Microarray analysis of chitin elicitation in Arabidopsis thaliana

scientific article

Microarray data quality analysis: lessons from the AFGC project. Arabidopsis Functional Genomics Consortium.

scientific article

Multiple myeloma phosphotyrosine proteomic profile associated with FGFR3 expression, ligand activation, and drug inhibition.

scientific article

Multiproteomic and Transcriptomic Analysis of Oncogenic β-Catenin Molecular Networks

scientific article published on 18 May 2018

Network-based approaches for extending the Wnt signalling pathway and identifying context-specific sub-networks

article

Noise-processing by signaling networks.

scientific article published on 3 April 2017

Paracrine signalling during ZEB1-mediated epithelial-mesenchymal transition augments local myofibroblast differentiation in lung fibrosis.

scientific article published on 26 July 2018

Proteomic Analysis of Azacitidine-Induced Degradation Profiles Identifies Multiple Chromatin and Epigenetic Regulators Including Uhrf1 and Dnmt1 as Sensitive to Azacitidine

scientific article published on 07 February 2019

Proteomic and bioinformatics profile of paired human alveolar macrophages and peripheral blood monocytes.

scientific article

Proteomics and Network Analyses Reveal Inhibition of Akt-mTOR Signaling in CD4+ T Cells by Mycobacterium tuberculosis Mannose-Capped Lipoarabinomannan

scientific article published on 10 October 2017

ROCS: a reproducibility index and confidence score for interaction proteomics studies

scientific article

Regulation of protein stability of DNA methyltransferase 1 by post-translational modifications

scientific article published on 03 January 2014

SGLT1 is required for the survival of triple-negative breast cancer cells via potentiation of EGFR activity

scientific article published on 14 June 2019

Single-cell pluripotency regulatory networks.

scientific article published on 30 June 2016

The Bait Compatibility Index: Computational Bait Selection for Interaction Proteomics Experiments ⬇️

scientific article published on October 1, 2010

The CRAPome: a contaminant repository for affinity purification-mass spectrometry data

scientific article

The reproducible acquisition of comparative liquid chromatography/tandem mass spectrometry data from complex biological samples.

scientific article

Transcripts of maize RbcS genes accumulate differentially in C3 and C4 tissues

scientific article published in March 1998

Urinary protein profiles in a rat model for diabetic complications

scientific article published on 04 June 2009

Visualization of expression clusters using Sammon's non-linear mapping

scientific article published on 01 July 2001

iOmicsPASS: network-based integration of multiomics data for predictive subnetwork discovery

scientific article published on 09 July 2019

Paulina is supported by:

About Paulina

Help