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List of works by Dirk Jan De Koning

A 0.5-Mbp deletion on bovine chromosome 23 is a strong candidate for stillbirth in Nordic Red cattle

scientific article published on 18 April 2016

A combined strategy for quantitative trait loci detection by genome-wide association

scientific article

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

scientific article

A note on permutation tests for genetic association analysis of quantitative traits when variances are heterogeneous

scientific article published on 01 December 2009

A region on chicken chromosome 2 affects both egg white thinning and egg weight

scientific article published on September 2005

A search for quantitative trait loci for milk production traits on chromosome 6 in Finnish Ayrshire cattle

scientific article published on 01 April 1999

A whole-genome scan for quantitative trait loci affecting teat number in pigs

scientific article published on 01 September 2001

Accuracy of Predicted Genomic Breeding Values in Purebred and Crossbred Pigs

scientific article published on 26 May 2015

Accuracy of genomic prediction of purebreds for cross bred performance in pigs.

scientific article

Accuracy of genomic prediction using deregressed breeding values estimated from purebred and crossbred offspring phenotypes in pigs.

scientific article published on July 2015

Accuracy of genomic prediction using low-density marker panels

scientific article published in July 2011

An expression QTL of closely linked candidate genes affects pH of meat in chickens

scientific article published on 03 January 2014

Analysis of a simulated microarray dataset: comparison of methods for data normalisation and detection of differential expression (open access publication).

scientific article

Analysis of the genetics of boar taint reveals both single SNPs and regional effects

scientific article

Analysis of the real EADGENE data set: comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (open access publication)

scientific article

Analysis of the real EADGENE data set: multivariate approaches and post analysis (open access publication)

scientific article

Asian low-androstenone haplotype on pig chromosome 6 does not unfavorably affect production and reproduction traits

article

Association analyses of the MAS-QTL data set using grammar, principal components and Bayesian network methodologies. ⬇️

scientific article

Back to the Future: Multiparent Populations Provide the Key to Unlocking the Genetic Basis of Complex Traits

scientific article published on June 2017

Back to the Future: Multiparent Populations Provide the Key to Unlocking the Genetic Basis of Complex Traits

scientific article published on 7 June 2017

Best linear unbiased prediction of genomic breeding values using a trait-specific marker-derived relationship matrix

scientific article

Bivariate threshold models for genetic evaluation of susceptibility to and ability to recover from mastitis in Danish Holstein cows.

scientific article published on 20 April 2017

Characterisation of non-coagulating milk and effects of milk composition and physical properties on rennet-induced coagulation in Swedish Red Dairy Cattle

article

Characterization and refinement of growth related quantitative trait loci in European sea bass ( Dicentrarchus labrax ) using a comparative approach

Combined analyses of data from quantitative trait loci mapping studies. Chromosome 4 effects on porcine growth and fatness

scientific article

Comparison of analyses of the QTLMAS XII common dataset. I: Genomic selection

scientific article

Comparison of analyses of the QTLMAS XII common dataset. II: genome-wide association and fine mapping

scientific article

Complex traits analysis of chicken growth using targeted genetical genomics

article

Conflicting candidates for cattle QTLs

scientific article published on 11 May 2006

Controlling false positives in the mapping of epistatic QTL.

scientific article published on 30 September 2009

Detecting dominant QTL with variance component analysis in simulated pedigrees

scientific article published in August 2008

Detecting parent of origin and dominant QTL in a two-generation commercial poultry pedigree using variance component methodology.

scientific article published on 05 January 2009

Detection of quantitative trait loci for backfat thickness and intramuscular fat content in pigs (Sus scrofa).

scientific article

Developing microsatellite markers from cDNA: a tool for adding expressed sequence tags to the genetic linkage map of the chicken

scientific article

Dissuasive effect, information provision, and consumer reactions to the term 'Biotechnology': The case of reproductive interventions in farmed fish

scientific article published on 26 September 2019

Does genomic selection have a future in plant breeding? ⬇️

scientific article published on July 16, 2013

Efficiency of genomic prediction for boar taint reduction in Danish Landrace pigs.

scientific article published on 09 October 2015

Estimates of heritability and genetic correlation for body length and resistance to fish pasteurellosis in the gilthead sea bream (Sparus aurata L.)

article

Extensive QTL and association analyses of the QTLMAS2009 Data

scientific article

Facilitating Discovery: The Role of Society Journals in Collaborative Science ⬇️

scientific article published on February 1, 2012

Facilitating discovery: the role of society journals in collaborative science

scientific article published on February 2012

Field cress genome mapping: Integrating linkage and comparative maps with cytogenetic analysis for rDNA carrying chromosomes

scientific article published on 19 November 2019

Fine mapping and imprinting analysis for fatness trait QTLs in pigs

article

Fine mapping of a calving QTL on Bos taurus autosome 18 in Holstein cattle

scientific article published on 20 October 2015

Full pedigree quantitative trait locus analysis in commercial pigs using variance components

scientific article

GENETICS and G3: community-driven science, community-driven journals

scientific article (publication date: September 2014)

GENETICS and G3: community-driven science, community-driven journals

scientific article (publication date: 18 September 2014)

Genetic analysis of atypical progesterone profiles in Holstein-Friesian cows from experimental research herds

scientific article published on 22 August 2014

Genetical genomics in humans and model organisms

scientific article

Genetical genomics in livestock: potentials and pitfalls

Genome Scan Reveals New Coat Color Loci in Exotic Pig Cross

scientific article published on 01 January 2002

Genome Scan for Parent-of-Origin QTL Effects on Bovine Growth and Carcass Traits

scientific article published on 12 July 2011

Genome-Wide Association Study for Susceptibility to and Recoverability From Mastitis in Danish Holstein Cows.

scientific article

Genome-wide association mapping for dominance effects in female fertility using real and simulated data from Danish Holstein cattle

scientific article published on 19 February 2020

Genome-wide association studies of growth traits in three dairy cattle breeds using whole-genome sequence data

scientific article

Genome-wide association study for bone strength in laying hens

article by Biaty Raymond et al published 29 June 2018 in Journal of Animal Science

Genome-wide association study for endocrine fertility traits using single nucleotide polymorphism arrays and sequence variants in dairy cattle

scientific article

Genome-wide association study identifies loci influencing natural antibody titers in milk of Dutch Holstein-Friesian cattle

scientific article published on 20 September 2019

Genome-wide association study of normal and atypical progesterone profiles in Holstein-Friesian dairy cows

scientific article published on 22 February 2019

Genome-wide associations for investigating time-dependent genetic effects for milk production traits in dairy cattle.

scientific article published on 23 October 2011

Genome-wide mapping of large deletions and their population-genetic properties in dairy cattle.

scientific article

Genome-wide scan for body composition in pigs reveals important role of imprinting

scientific article

Genomewide association study to detect QTL for twinning rate in Baluchi sheep

Genomewide rapid association using mixed model and regression: a fast and simple method for genomewide pedigree-based quantitative trait loci association analysis

scientific article

Genomic selection for QTL-MAS data using a trait-specific relationship matrix

scientific article

Genomic selection needs to be carefully assessed to meet specific requirements in livestock breeding programs

scientific article

Goals and hurdles for a successful implementation of genomic selection in breeding programme for selected annual and perennial crops

scientific article published on 16 May 2016

Heritability of cortisol response to confinement stress in European sea bass dicentrarchus labrax.

scientific article

High throughput analyses of epistasis for swine body dimensions and organ weights

scientific article published in February 2011

Identification of QTL on Chromosome 18 Associated with Non-Coagulating Milk in Swedish Red Cows

scientific article published on 15 April 2016

Identification of novel candidate genes for the inverted teat defect in sows using a genome-wide marker panel

scientific article

Identification of quantitative trait loci for production traits in commercial pig populations

scientific article

Imprinting in Genome Analysis: Modeling Parent-Of-Origin Effects in QTL Studies

Improving accuracy of bulls' predicted genomic breeding values for fertility using daughters' milk progesterone profiles.

scientific article published on 7 March 2018

Including copy number variation in association studies to predict genotypic values

scientific article

Lactation curve models for estimating gene effects over a timeline.

scientific article

Livestock genomics: bridging the gap between mice and men

scientific article published on 22 October 2007

Mapping of Serum Amylase-1 and Quantitative Trait Loci for Milk Production Traits to Cattle Chromosome 4 ⬇️

scientific article published on May 1, 1998

Mapping of multiple quantitative trait loci affecting bovine spongiform encephalopathy.

scientific article published on August 2004

Mapping of multiple quantitative trait loci by simple regression in half-sib designs

scientific article published on 01 March 2001

Mapping of quantitative trait loci affecting quality and production traits in egg layers

scientific article published on 01 July 2002

Methodological aspects of the genetic dissection of gene expression

scientific article published in May 2005

Meuwissen et al. on Genomic Selection

scientific article published on May 2016

Molecular mapping and identification of quantitative trait loci for domestication traits in the field cress (Lepidium campestre L.) genome

scientific article published on 19 February 2020

Multiple marker mapping of quantitative trait loci of Finnish dairy cattle by regression

scientific article

On the detection of imprinted quantitative trait loci in experimental crosses of outbred species.

scientific article published on June 2002

Opportunities for genomic prediction for fertility using endocrine and classical fertility traits in dairy cattle

scientific article published on September 2016

Optimal design of genetic studies of gene expression with two-color microarrays in outbred crosses

scientific article published on 14 September 2008

Population Structure and Genetic Diversity of Nile Tilapia (Oreochromis niloticus) Strains Cultured in Tanzania

scientific article published on 20 December 2019

Predicted optimum ambient temperatures for broiler chickens to dissipate metabolic heat do not affect performance or improve breast muscle quality

scientific article published on 15 December 2015

Predicting heterosis for egg production traits in crossbred offspring of individual White Leghorn sires using genome-wide SNP data

scientific article

QTL affecting morphometric traits and stress response in the gilthead seabream (Sparus aurata)

article

QTL analysis of body weight and conformation score in commercial broiler chickens using variance component and half-sib analyses

scientific article published in June 2006

QTL for body weight, morphometric traits and stress response in European sea bass Dicentrarchus labrax.

scientific article published on 18 December 2009

QTL for resistance to summer mortality and OsHV-1 load in the Pacific oyster (Crassostrea gigas)

article

QTL mapping designs for aquaculture

article published in 2008

QTL modulating ear size and erectness in pigs

scientific article

Quantitative Trait Loci Affecting Milk Production Traits in Finnish Ayrshire Dairy Cattle

scientific article published on 01 May 2003

Quantitative trait Loci for health traits in Finnish Ayrshire cattle

scientific article published on 01 February 2004

Quantitative trait loci affecting eggshell traits in an F(2) population

scientific article published on 4 November 2010

Quantitative trait loci for resistance to fish pasteurellosis in gilthead sea bream (Sparus aurata).

scientific article

Quantitative trait loci with parent-of-origin effects in chicken

scientific article published on 01 August 2004

Quantitative trait locus detection in commercial broiler lines using candidate regions

scientific article published on 01 May 2003

Rapid and robust association mapping of expression quantitative trait loci

scientific article

Removal of alleles by genome editing (RAGE) against deleterious load

scientific article published on 17 April 2019

Removal of alleles by genome editing — RAGE against the deleterious load

Segregation of QTL for production traits in commercial meat-type chickens

scientific article published in June 2004

Setting the Standard: A Special Focus on Genomic Selection in GENETICS and G3 ⬇️

scientific article published on April 1, 2012

Setting the Standard: A Special Focus on Genomic Selection in GENETICS and G3.

scientific article published on April 2012

Shift in chicken intestinal gene association networks after infection with Salmonella

scientific article published on 16 August 2011

Short communication: Imputation of markers on the bovine X chromosome

scientific article published on 13 July 2016

Short tandem repeats and methylation in the promoter region affect expression of cystathionine beta-synthase gene in the laying hen

scientific article published on 28 May 2019

SuperSAGE digital expression analysis of differential growth rate in a European sea bass population

The EADGENE Microarray Data Analysis Workshop (open access publication).

scientific article

The EADGENE and SABRE post-analyses workshop

scientific article

The Genetic Architecture of Economically Important Traits Provides Major Challenges for the Implementation of Gene Editing in Livestock

article

The X Chromosome harbors quantitative trait loci for backfat thickness and intramuscular fat content in pigs

The effect of adipocyte and heart fatty acid-binding protein genes on intramuscular fat and backfat content in Meishan crossbred pigs

scientific article published on 01 March 2000

The efficiency of mapping of quantitative trait loci using cofactor analysis in half-sib design

scientific article published on 23 February 2006

The genetic dissection of immune response using gene-expression studies and genome mapping

scientific article

Third Report on Chicken Genes and Chromosomes 2015.

scientific article published on 14 July 2015

Towards in vitro genetics

scientific article

Transcriptional profile of breast muscle in heat stressed layers is similar to that of broiler chickens at control temperature

scientific article published on 20 September 2017

Using Targeted Resequencing for Identification of Candidate Genes and SNPs for a QTL Affecting the pH Value of Chicken Meat

scientific article published on 14 August 2015

Validated quantitative trait loci for eggshell quality in experimental and commercial laying hens

scientific article published on 24 May 2018

Why breeding values estimated using familial data should not be used for genome-wide association studies

scientific article

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