List of works - Reinout Raijmakers

ABAP: antibody-based assay for peptidylarginine deiminase activity

scientific article published on 21 July 2007

Applications of stable isotope dimethyl labeling in quantitative proteomics

scientific article published on 27 May 2012

Assessing biological variation and protein processing in primary human leukocytes by automated multiplex stable isotope labeling coupled to 2 dimensional peptide separation

scientific article published on 06 May 2009

Autoantibodies directed to novel components of the PM/Scl complex, the human exosome

scientific article

Autoantigenicity of nucleolar complexes.

scientific article published on October 2003

Automated online sequential isotope labeling for protein quantitation applied to proteasome tissue-specific diversity

scientific article published on 4 June 2008

C1D is a major autoantibody target in patients with the polymyositis-scleroderma overlap syndrome

scientific article

Caspase-mediated cleavage of the exosome subunit PM/Scl-75 during apoptosis

scientific article published on January 2007

Cell and molecular biology of the exosome: how to make or break an RNA

scientific article

Citrullination of central nervous system proteins during the development of experimental autoimmune encephalomyelitis

scientific article published in June 2005

Cleavage specificities of the brother and sister proteases Lys-C and Lys-N.

scientific article published on 18 October 2010

Comparative multiplexed mass spectrometric analyses of endogenously expressed yeast nuclear and cytoplasmic exosomes.

scientific article

Deep Proteome Profiling of Circulating Granulocytes Reveals Bactericidal/Permeability-Increasing Protein as a Biomarker for Severe Atherosclerotic Coronary Stenosis

Dis3-like 1: a novel exoribonuclease associated with the human exosome

scientific article

Elevated levels of fibrinogen-derived endogenous citrullinated peptides in synovial fluid of rheumatoid arthritis patients

scientific article

Evaluation of the Deuterium Isotope Effect in Zwitterionic Hydrophilic Interaction Liquid Chromatography Separations for Implementation in a Quantitative Proteomic Approach

scientific article published on 30 September 2011

Experimental autoimmune encephalomyelitis induction in peptidylarginine deiminase 2 knockout mice

scientific article published on 01 September 2006

Exploring the human leukocyte phosphoproteome using a microfluidic reversed-phase-TiO2-reversed-phase high-performance liquid chromatography phosphochip coupled to a quadrupole time-of-flight mass spectrometer

scientific article

Fully automated isotopic dimethyl labeling and phosphopeptide enrichment using a microfluidic HPLC phosphochip

scientific article published on 14 September 2012

In vivo profiling and visualization of cellular protein-lipid interactions using bifunctional fatty acids.

scientific article published on 28 February 2013

Increased citrullination of histone H3 in multiple sclerosis brain and animal models of demyelination: a role for tumor necrosis factor-induced peptidylarginine deiminase 4 translocation.

scientific article published in November 2006

Increased peptidylarginine deiminase type II in hypoxic astrocytes

scientific article

Inhibition of peptidyl-arginine deiminases reverses protein-hypercitrullination and disease in mouse models of multiple sclerosis

scientific article published on November 2012

Kinetics of human peptidylarginine deiminase 2 (hPAD2)--reduction of Ca2+ dependence by phospholipids and assessment of proposed inhibition by paclitaxel side chains

scientific article

MPP6 is an exosome-associated RNA-binding protein involved in 5.8S rRNA maturation

scientific article

Mapping of citrullinated fibrinogen B-cell epitopes in rheumatoid arthritis by imaging surface plasmon resonance

scientific article published on 23 December 2010

Metal-free and pH-controlled introduction of azides in proteins

article published in 2011

Methylation of arginine residues interferes with citrullination by peptidylarginine deiminases in vitro

scientific article published on 25 January 2007

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics

scientific article published in January 2009

Myelin localization of peptidylarginine deiminases 2 and 4: comparison of PAD2 and PAD4 activities

scientific article published on 28 January 2008

Novel aspects of autoantibodies to the PM/Scl complex: clinical, genetic and diagnostic insights

scientific article (publication date: August 2007)

Oxidative stress-induced modifications of histidyl-tRNA synthetase affect its tRNA aminoacylation activity but not its immunoreactivity

scientific article published in 2011

PM-Scl-75 is the main autoantigen in patients with the polymyositis/scleroderma overlap syndrome

scientific article (publication date: February 2004)

PRIME-XS, a European infrastructure for proteomics

scientific article published on 23 June 2014

Peptidylarginine deiminase expression and activity in PAD2 knock-out and PAD4-low mice

scientific article published on 28 September 2012

Phosphatidylethanolamine-binding proteins, including RKIP, exhibit affinity for phosphodiesterase-5 inhibitors

scientific article published in November 2009

Profiling of N-acetylated protein termini provides in-depth insights into the N-terminal nature of the proteome

scientific article

Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring

scientific article

Protein-protein interactions of hCsl4p with other human exosome subunits

scientific article

Quantifying cross-tissue diversity in proteasome complexes by mass spectrometry

RockerBox: analysis and filtering of massive proteomics search results.

scientific article

Site-specific methionine oxidation in calmodulin affects structural integrity and interaction with Ca2+/calmodulin-dependent protein kinase II

Synthetic peptides: the future of patient management in systemic rheumatic diseases?

scientific article published on January 2007

Target profiling of a small library of phosphodiesterase 5 (PDE5) inhibitors using chemical proteomics.

scientific article

The association of the human PM/Scl-75 autoantigen with the exosome is dependent on a newly identified N terminus

scientific article

The exosome, a molecular machine for controlled RNA degradation in both nucleus and cytoplasm

scientific article

The heterogeneous nuclear ribonucleoproteins I and K interact with a subset of the ro ribonucleoprotein-associated Y RNAs in vitro and in vivo.

scientific article published on 13 March 2001

The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements

scientific article

Three novel components of the human exosome

scientific article

List of works by Reinout Raijmakers

ABAP: antibody-based assay for peptidylarginine deiminase activity

Applications of stable isotope dimethyl labeling in quantitative proteomics

Assessing biological variation and protein processing in primary human leukocytes by automated multiplex stable isotope labeling coupled to 2 dimensional peptide separation

Autoantibodies directed to novel components of the PM/Scl complex, the human exosome

Autoantigenicity of nucleolar complexes.

Automated online sequential isotope labeling for protein quantitation applied to proteasome tissue-specific diversity

C1D is a major autoantibody target in patients with the polymyositis-scleroderma overlap syndrome

Caspase-mediated cleavage of the exosome subunit PM/Scl-75 during apoptosis

Cell and molecular biology of the exosome: how to make or break an RNA

Citrullination of central nervous system proteins during the development of experimental autoimmune encephalomyelitis

Cleavage specificities of the brother and sister proteases Lys-C and Lys-N.

Comparative multiplexed mass spectrometric analyses of endogenously expressed yeast nuclear and cytoplasmic exosomes.

Deep Proteome Profiling of Circulating Granulocytes Reveals Bactericidal/Permeability-Increasing Protein as a Biomarker for Severe Atherosclerotic Coronary Stenosis

Dis3-like 1: a novel exoribonuclease associated with the human exosome

Elevated levels of fibrinogen-derived endogenous citrullinated peptides in synovial fluid of rheumatoid arthritis patients

Evaluation of the Deuterium Isotope Effect in Zwitterionic Hydrophilic Interaction Liquid Chromatography Separations for Implementation in a Quantitative Proteomic Approach

Experimental autoimmune encephalomyelitis induction in peptidylarginine deiminase 2 knockout mice

Exploring the human leukocyte phosphoproteome using a microfluidic reversed-phase-TiO2-reversed-phase high-performance liquid chromatography phosphochip coupled to a quadrupole time-of-flight mass spectrometer

Fully automated isotopic dimethyl labeling and phosphopeptide enrichment using a microfluidic HPLC phosphochip

In vivo profiling and visualization of cellular protein-lipid interactions using bifunctional fatty acids.

Increased citrullination of histone H3 in multiple sclerosis brain and animal models of demyelination: a role for tumor necrosis factor-induced peptidylarginine deiminase 4 translocation.

Increased peptidylarginine deiminase type II in hypoxic astrocytes

Inhibition of peptidyl-arginine deiminases reverses protein-hypercitrullination and disease in mouse models of multiple sclerosis

Kinetics of human peptidylarginine deiminase 2 (hPAD2)--reduction of Ca2+ dependence by phospholipids and assessment of proposed inhibition by paclitaxel side chains

MPP6 is an exosome-associated RNA-binding protein involved in 5.8S rRNA maturation

Mapping of citrullinated fibrinogen B-cell epitopes in rheumatoid arthritis by imaging surface plasmon resonance

Metal-free and pH-controlled introduction of azides in proteins

Methylation of arginine residues interferes with citrullination by peptidylarginine deiminases in vitro

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics

Myelin localization of peptidylarginine deiminases 2 and 4: comparison of PAD2 and PAD4 activities

Novel aspects of autoantibodies to the PM/Scl complex: clinical, genetic and diagnostic insights

Oxidative stress-induced modifications of histidyl-tRNA synthetase affect its tRNA aminoacylation activity but not its immunoreactivity

PM-Scl-75 is the main autoantigen in patients with the polymyositis/scleroderma overlap syndrome

PRIME-XS, a European infrastructure for proteomics

Peptidylarginine deiminase expression and activity in PAD2 knock-out and PAD4-low mice

Phosphatidylethanolamine-binding proteins, including RKIP, exhibit affinity for phosphodiesterase-5 inhibitors

Profiling of N-acetylated protein termini provides in-depth insights into the N-terminal nature of the proteome

Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring

Protein-protein interactions of hCsl4p with other human exosome subunits

Quantifying cross-tissue diversity in proteasome complexes by mass spectrometry

RockerBox: analysis and filtering of massive proteomics search results.

Site-specific methionine oxidation in calmodulin affects structural integrity and interaction with Ca2+/calmodulin-dependent protein kinase II

Synthetic peptides: the future of patient management in systemic rheumatic diseases?

Target profiling of a small library of phosphodiesterase 5 (PDE5) inhibitors using chemical proteomics.

The association of the human PM/Scl-75 autoantigen with the exosome is dependent on a newly identified N terminus

The exosome, a molecular machine for controlled RNA degradation in both nucleus and cytoplasm

The heterogeneous nuclear ribonucleoproteins I and K interact with a subset of the ro ribonucleoprotein-associated Y RNAs in vitro and in vivo.

The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements

Three novel components of the human exosome