List of works - Phil Oger

A Rhodococcus qsdA-encoded enzyme defines a novel class of large-spectrum quorum-quenching lactonases

scientific article

A highly selectable and highly transferable Ti plasmid to study conjugal host range and Ti plasmid dissemination in complex ecosystems

scientific article

A second T-region of the soybean-supervirulent chrysopine-type Ti plasmid pTiChry5, and construction of a fully disarmed vir helper plasmid

scientific article published in October 2000

Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soilborne Pseudomonas spp

scientific article published in March 2001

Adaptation of the membrane in Archaea

scientific article published on 16 July 2013

Agrobacterium is a definable genus of the family Rhizobiaceae

scientific article

Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems

scientific article published on 22 February 2011

Biochemical characterization and mutational studies of a thermostable uracil DNA glycosylase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

scientific article published on 14 May 2019

Biochemical characterization and mutational studies of the 8-oxoguanine DNA glycosylase from the hyperthermophilic and radioresistant archaeon Thermococcus gammatolerans

scientific article published on 02 August 2019

Biochemical characterization of a thermostable DNA ligase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

scientific article published on 27 March 2019

Biochemical characterization of a thermostable endonuclease V from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

scientific article published on 22 May 2018

Biostimulation to identify microbial communities involved in methane generation in shallow, kerogen-rich shales

scientific article

Bradyrhizobium commune sp. nov., isolated from nodules of a wide range of native legumes across the Australian continent

scientific article published in 2023

Co-evolution of the agrocinopine opines and the agrocinopine-mediated control of TraR, the quorum-sensing activator of the Ti plasmid conjugation system

scientific article

Complete Genome Sequence of the Hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 Isolated from the Rebecca's Roost Hydrothermal Vent in the Guaymas Basin.

scientific article

Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archaeon Thermococcus barophilus Ch5, Capable of Growth at the Expense of Hydrogenogenesis from Carbon Monoxide and Formate

scientific article published on 14 January 2016

Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archeon Thermococcus piezophilus CDGST, Able To Grow under Extreme Hydrostatic Pressures

scientific article published on 14 July 2016

Complete Genome Sequences of 11 Type Species from the Thermococcus Genus of Hyperthermophilic and Piezophilic Archaea

scientific article published on 22 February 2018

Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3

scientific article

Copper transporters are responsible for copper isotopic fractionation in eukaryotic cells

scientific article published on 17 March 2017

Correlation of the abundance of betaproteobacteria on mineral surfaces with mineral weathering in forest soils

scientific article

Corrigendum to "Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere" [Syst. Appl. Microbiol. 40 (2017) 345-351]

scientific article published on 15 March 2019

Development of a low-pressure diamond anvil cell and analytical tools to monitor microbial activities in situ under controlled P and T.

scientific article published on 19 December 2005

Distinct ectomycorrhizospheres share similar bacterial communities as revealed by pyrosequencing-based analysis of 16S rRNA genes

scientific article

Draft Genome Sequence of Burkholderia sp. Strain PML1(12), an Ectomycorrhizosphere-Inhabiting Bacterium with Effective Mineral-Weathering Ability

scientific article published on 23 July 2015

Effect of crop rotation and soil cover on alteration of the soil microflora generated by the culture of transgenic plants producing opines

scientific article published on 01 July 2000

Engineered rhizosphere: the trophic bias generated by opine-producing plants is independent of the opine type, the soil origin, and the plant species.

scientific article published on May 2002

Engineering bacterial competitiveness and persistence in the phytosphere.

scientific article

Engineering root exudation of Lotus toward the production of two novel carbon compounds leads to the selection of distinct microbial populations in the rhizosphere

scientific article published in January 2004

Epsilonproteobacteria dominate bacterial diversity at a natural tar seep.

scientific article

Fractionation of stable zinc isotopes in the zinc hyperaccumulator Arabidopsis halleri and nonaccumulator Arabidopsis petraea

scientific article published on 30 September 2011

Genetically engineered plants producing opines alter their biological environment

scientific article published on 01 April 1997

Genome expression of Thermococcus barophilus and Thermococcus kodakarensis in response to different hydrostatic pressure conditions.

scientific article published on 31 July 2015

Genomic and transcriptomic characterization of the <i>Collimonas</i> quorum sensing genes and regulon

scientific article published in 2022

High hydrostatic pressure increases amino acid requirements in the piezo-hyperthermophilic archaeon Thermococcus barophilus.

scientific article

High protein flexibility and reduced hydration water dynamics are key pressure adaptive strategies in prokaryotes.

scientific article published on 6 September 2016

High-Temperature Behavior of Early Life Membrane Models

scientific article published on 04 November 2020

Homeoviscous Adaptation of Membranes in Archaea.

scientific article published on January 2015

Hypoxia induces copper stable isotope fractionation in hepatocellular carcinoma, in a HIF-independent manner

scientific article published on 8 August 2016

In Search for the Membrane Regulators of Archaea

scientific article published on 09 September 2019

In situ Raman and X-ray spectroscopies to monitor microbial activities under high hydrostatic pressure

scientific article

Iron-binding compounds from Agrobacterium spp.: biological control strain Agrobacterium rhizogenes K84 produces a hydroxamate siderophore

scientific article

Medical applications of Cu, Zn, and S isotope effects

scientific article

Membrane homeoviscous adaptation in the piezo-hyperthermophilic archaeon Thermococcus barophilus.

scientific article published on 21 October 2015

Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes

scientific article published on 23 June 2015

Microbial methanogenesis in subsurface oil and coal

scientific article

Molecular chaperone accumulation as a function of stress evidences adaptation to high hydrostatic pressure in the piezophilic archaeon Thermococcus barophilus.

scientific article

N-Acylhomoserine lactone quorum-sensing molecules are modified and degraded by Rhodococcus erythropolis W2 by both amidolytic and novel oxidoreductase activities

scientific article

N-acyl homoserine lactones are degraded via an amidolytic activity in Comamonas sp. strain D1

scientific article published on 29 November 2006

N-acyl-homoserine lactone-mediated quorum-sensing in Azospirillum: an exception rather than a rule ⬇️

scientific article published in November 2006

Novel Intact Polar and Core Lipid Compositions in the Pyrococcus Model Species, P. furiosus and P. yayanosii, Reveal the Largest Lipid Diversity Amongst Thermococcales

scientific article published on 29 May 2020

Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria.

scientific article published in August 2003

Octopine-type Ti plasmids code for a mannopine-inducible dominant-negative allele of traR, the quorum-sensing activator that regulates Ti plasmid conjugal transfer

scientific article published in January 1998

Origins of life and biochemistry under high-pressure conditions.

scientific article published on 29 August 2006

Plant Symbionts Are Engineers of the Plant-Associated Microbiome

scientific article published on 06 July 2019

Pyrococcus kukulkanii sp. nov., a hyperthermophilic, piezophilic archaeon isolated from a deep-sea hydrothermal vent.

scientific article

Quorum sensing and quorum quenching: the yin and yang of bacterial communication.

scientific article published on January 2009

Quorum-sensing system of Agrobacterium plasmids: analysis and utility

scientific article published on 01 January 2002

Random mutagenesis of the hyperthermophilic archaeon Pyrococcus furiosus using in vitro mariner transposition and natural transformation

scientific article

Restoration of the di-myo-inositol-phosphate pathway in the piezo-hyperthermophilic archaeon Thermococcus barophilus

scientific article published on 22 May 2015

Screening for N-AHSL-Based-Signaling Interfering Enzymes

scientific article

Screening for N-AHSL-based-signaling interfering enzymes

scientific article published on 01 January 2010

Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

scientific article

Structural Characterization of an Archaeal Lipid Bilayer as a Function of Hydration and Temperature

scientific article published on 06 March 2020

The S-adenosyl-L-homocysteine hydrolase gene ahcY of Agrobacterium radiobacter K84 is required for optimal growth, antibiotic production, and biocontrol of crown gall disease.

scientific article published in June 2009

The bases of crown gall tumorigenesis

scientific journal article

The first study on the impact of osmolytes in whole cells of high temperature-adapted microorganisms

scientific article published on 01 October 2019

The high pressure life of piezophiles

scientific article

The many ways of coping with pressure.

scientific article published on 28 October 2010

Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise.

scientific article

List of works by Phil Oger

A Rhodococcus qsdA-encoded enzyme defines a novel class of large-spectrum quorum-quenching lactonases

A highly selectable and highly transferable Ti plasmid to study conjugal host range and Ti plasmid dissemination in complex ecosystems

A second T-region of the soybean-supervirulent chrysopine-type Ti plasmid pTiChry5, and construction of a fully disarmed vir helper plasmid

Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soilborne Pseudomonas spp

Adaptation of the membrane in Archaea

Agrobacterium is a definable genus of the family Rhizobiaceae

Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems

Biochemical characterization and mutational studies of a thermostable uracil DNA glycosylase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Biochemical characterization and mutational studies of the 8-oxoguanine DNA glycosylase from the hyperthermophilic and radioresistant archaeon Thermococcus gammatolerans

Biochemical characterization of a thermostable DNA ligase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Biochemical characterization of a thermostable endonuclease V from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Biostimulation to identify microbial communities involved in methane generation in shallow, kerogen-rich shales

Bradyrhizobium commune sp. nov., isolated from nodules of a wide range of native legumes across the Australian continent

Co-evolution of the agrocinopine opines and the agrocinopine-mediated control of TraR, the quorum-sensing activator of the Ti plasmid conjugation system

Complete Genome Sequence of the Hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 Isolated from the Rebecca's Roost Hydrothermal Vent in the Guaymas Basin.

Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archaeon Thermococcus barophilus Ch5, Capable of Growth at the Expense of Hydrogenogenesis from Carbon Monoxide and Formate

Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archeon Thermococcus piezophilus CDGST, Able To Grow under Extreme Hydrostatic Pressures

Complete Genome Sequences of 11 Type Species from the Thermococcus Genus of Hyperthermophilic and Piezophilic Archaea

Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3

Copper transporters are responsible for copper isotopic fractionation in eukaryotic cells

Correlation of the abundance of betaproteobacteria on mineral surfaces with mineral weathering in forest soils

Corrigendum to "Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere" [Syst. Appl. Microbiol. 40 (2017) 345-351]

Development of a low-pressure diamond anvil cell and analytical tools to monitor microbial activities in situ under controlled P and T.

Distinct ectomycorrhizospheres share similar bacterial communities as revealed by pyrosequencing-based analysis of 16S rRNA genes

Draft Genome Sequence of Burkholderia sp. Strain PML1(12), an Ectomycorrhizosphere-Inhabiting Bacterium with Effective Mineral-Weathering Ability

Effect of crop rotation and soil cover on alteration of the soil microflora generated by the culture of transgenic plants producing opines

Engineered rhizosphere: the trophic bias generated by opine-producing plants is independent of the opine type, the soil origin, and the plant species.

Engineering bacterial competitiveness and persistence in the phytosphere.

Engineering root exudation of Lotus toward the production of two novel carbon compounds leads to the selection of distinct microbial populations in the rhizosphere

Epsilonproteobacteria dominate bacterial diversity at a natural tar seep.

Fractionation of stable zinc isotopes in the zinc hyperaccumulator Arabidopsis halleri and nonaccumulator Arabidopsis petraea

Genetically engineered plants producing opines alter their biological environment

Genome expression of Thermococcus barophilus and Thermococcus kodakarensis in response to different hydrostatic pressure conditions.

Genomic and transcriptomic characterization of the <i>Collimonas</i> quorum sensing genes and regulon

High hydrostatic pressure increases amino acid requirements in the piezo-hyperthermophilic archaeon Thermococcus barophilus.

High protein flexibility and reduced hydration water dynamics are key pressure adaptive strategies in prokaryotes.

High-Temperature Behavior of Early Life Membrane Models

Homeoviscous Adaptation of Membranes in Archaea.

Hypoxia induces copper stable isotope fractionation in hepatocellular carcinoma, in a HIF-independent manner

In Search for the Membrane Regulators of Archaea

In situ Raman and X-ray spectroscopies to monitor microbial activities under high hydrostatic pressure

Iron-binding compounds from Agrobacterium spp.: biological control strain Agrobacterium rhizogenes K84 produces a hydroxamate siderophore

Medical applications of Cu, Zn, and S isotope effects

Membrane homeoviscous adaptation in the piezo-hyperthermophilic archaeon Thermococcus barophilus.

Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes

Microbial methanogenesis in subsurface oil and coal

Molecular chaperone accumulation as a function of stress evidences adaptation to high hydrostatic pressure in the piezophilic archaeon Thermococcus barophilus.

N-Acylhomoserine lactone quorum-sensing molecules are modified and degraded by Rhodococcus erythropolis W2 by both amidolytic and novel oxidoreductase activities

N-acyl homoserine lactones are degraded via an amidolytic activity in Comamonas sp. strain D1

N-acyl-homoserine lactone-mediated quorum-sensing in Azospirillum: an exception rather than a rule ⬇️

Novel Intact Polar and Core Lipid Compositions in the Pyrococcus Model Species, P. furiosus and P. yayanosii, Reveal the Largest Lipid Diversity Amongst Thermococcales

Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria.

Octopine-type Ti plasmids code for a mannopine-inducible dominant-negative allele of traR, the quorum-sensing activator that regulates Ti plasmid conjugal transfer

Origins of life and biochemistry under high-pressure conditions.

Plant Symbionts Are Engineers of the Plant-Associated Microbiome

Pyrococcus kukulkanii sp. nov., a hyperthermophilic, piezophilic archaeon isolated from a deep-sea hydrothermal vent.

Quorum sensing and quorum quenching: the yin and yang of bacterial communication.

Quorum-sensing system of Agrobacterium plasmids: analysis and utility

Random mutagenesis of the hyperthermophilic archaeon Pyrococcus furiosus using in vitro mariner transposition and natural transformation

Restoration of the di-myo-inositol-phosphate pathway in the piezo-hyperthermophilic archaeon Thermococcus barophilus

Screening for N-AHSL-Based-Signaling Interfering Enzymes

Screening for N-AHSL-based-signaling interfering enzymes

Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

Structural Characterization of an Archaeal Lipid Bilayer as a Function of Hydration and Temperature

The S-adenosyl-L-homocysteine hydrolase gene ahcY of Agrobacterium radiobacter K84 is required for optimal growth, antibiotic production, and biocontrol of crown gall disease.

The bases of crown gall tumorigenesis

The first study on the impact of osmolytes in whole cells of high temperature-adapted microorganisms

The high pressure life of piezophiles

The many ways of coping with pressure.

Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise.