List of works - Jaume Bonet

ADP-ribose-derived nuclear ATP synthesis by NUDIX5 is required for chromatin remodeling

scientific journal article

ATTACK, a novel bispecific T cell-recruiting antibody with trivalent EGFR binding and monovalent CD3 binding for cancer immunotherapy

scientific article published on 27 September 2017

Amyloid-β Peptide Nitrotyrosination Stabilizes Oligomers and Enhances NMDAR-Mediated Toxicity.

scientific article published in November 2016

ArchDB 2014: structural classification of loops in proteins

scientific article

Boosting subdominant neutralizing antibody responses with a computationally designed epitope-focused immunogen

article

CDK2-dependent activation of PARP-1 is required for hormonal gene regulation in breast cancer cells.

scientific article

Characterization of protein hubs by inferring interacting motifs from protein interactions

scientific article

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

scientific article published on 23 August 2016

De novo protein design enables the precise induction of RSV-neutralizing antibodies

scientific article published on 01 May 2020

Elongation of the C-terminal domain of an anti-amyloid β single-chain variable fragment increases its thermodynamic stability and decreases its aggregation tendency

scientific article published on 19 June 2013

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

scientific article published on 10 October 2016

Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design

scientific article published on 6 March 2014

Generation and characterization of monospecific and bispecific hexavalent trimerbodies

scientific article published on 5 December 2012

In vivo tumor targeting and imaging with engineered trivalent antibody fragments containing collagen-derived sequences

scientific article

Inferring causal molecular networks: empirical assessment through a community-based effort

scientific article

InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.

scientific article

Intramolecular trimerization, a novel strategy for making multispecific antibodies with controlled orientation of the antigen binding domains

scientific article

Macromolecular modeling and design in Rosetta: recent methods and frameworks

scientific article published on 01 June 2020

Multivalent antibodies: when design surpasses evolution.

scientific article published on 04 May 2010

Networks of ProteinProtein Interactions: From Uncertainty to Molecular Details.

scientific article

On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures.

scientific article published on 27 September 2017

On the use of knowledge-based potentials for the evaluation of models of protein-protein, protein-DNA, and protein-RNA interactions.

scientific article published on January 2014

Prediction of a new class of RNA recognition motif

scientific article published on 17 November 2010

Rosetta FunFolDes - A general framework for the computational design of functional proteins

scientific article published on 19 November 2018

RosettaSurf—A surface-centric computational design approach

scientific article published on 16 March 2022

Targeting Importin-α7 as a Therapeutic Approach against Pandemic Influenza Viruses.

scientific article

The role of residue stability in transient protein-protein interactions involved in enzymatic phosphate hydrolysis. A computational study

scientific article published in April 2006

Understanding protein-protein interactions using local structural features

scientific article published on 23 January 2013

iLoops: a protein-protein interaction prediction server based on structural features.

scientific article published on 9 July 2013

rstoolbox - a Python library for large-scale analysis of computational protein design data and structural bioinformatics

scientific article published on 15 May 2019

List of works by Jaume Bonet

ADP-ribose-derived nuclear ATP synthesis by NUDIX5 is required for chromatin remodeling

ATTACK, a novel bispecific T cell-recruiting antibody with trivalent EGFR binding and monovalent CD3 binding for cancer immunotherapy

Amyloid-β Peptide Nitrotyrosination Stabilizes Oligomers and Enhances NMDAR-Mediated Toxicity.

ArchDB 2014: structural classification of loops in proteins

Boosting subdominant neutralizing antibody responses with a computationally designed epitope-focused immunogen

CDK2-dependent activation of PARP-1 is required for hormonal gene regulation in breast cancer cells.

Characterization of protein hubs by inferring interacting motifs from protein interactions

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

De novo protein design enables the precise induction of RSV-neutralizing antibodies

Elongation of the C-terminal domain of an anti-amyloid β single-chain variable fragment increases its thermodynamic stability and decreases its aggregation tendency

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design

Generation and characterization of monospecific and bispecific hexavalent trimerbodies

In vivo tumor targeting and imaging with engineered trivalent antibody fragments containing collagen-derived sequences

Inferring causal molecular networks: empirical assessment through a community-based effort

InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.

Intramolecular trimerization, a novel strategy for making multispecific antibodies with controlled orientation of the antigen binding domains

Macromolecular modeling and design in Rosetta: recent methods and frameworks

Multivalent antibodies: when design surpasses evolution.

Networks of ProteinProtein Interactions: From Uncertainty to Molecular Details.

On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures.

On the use of knowledge-based potentials for the evaluation of models of protein-protein, protein-DNA, and protein-RNA interactions.

Prediction of a new class of RNA recognition motif

Rosetta FunFolDes - A general framework for the computational design of functional proteins

RosettaSurf—A surface-centric computational design approach

Targeting Importin-α7 as a Therapeutic Approach against Pandemic Influenza Viruses.

The role of residue stability in transient protein-protein interactions involved in enzymatic phosphate hydrolysis. A computational study

Understanding protein-protein interactions using local structural features

iLoops: a protein-protein interaction prediction server based on structural features.

rstoolbox - a Python library for large-scale analysis of computational protein design data and structural bioinformatics