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List of works by Michael T. Monaghan

A Global Agenda for Advancing Freshwater Biodiversity Research

scientific article

A Global Agenda for Advancing Freshwater Biodiversity Research

A global agenda for advancing freshwater biodiversity research

scientific article published in 2021

A molecular phylogenetic analysis of the Scarabaeinae (dung beetles).

scientific article

A pigment composition analysis reveals community changes in pre-established stream periphyton under low-level artificial light at night

article

A transition to white LED increases ecological impacts of nocturnal illumination on aquatic primary producers in a lowland agricultural drainage ditch

scientific article published on 14 May 2018

Accelerated species inventory on Madagascar using coalescent-based models of species delineation

scientific article

Act together—implications of symbioses in aquatic ciliates ⬇️

scientific article published on August 7, 2012

Adaptive genetic divergence along narrow environmental gradients in four stream insects

scientific article

Amiloride is neuroprotective in an MPTP model of Parkinson's disease

scientific article published on 7 July 2008

Artificial Light at Night Affects Organism Flux across Ecosystem Boundaries and Drives Community Structure in the Recipient Ecosystem

article by Alessandro Manfrin et al published 20 October 2017 in Frontiers in environmental science

Artificial light at night decreases biomass and alters community composition of benthic primary producers in a sub-alpine stream

article

Behavioral characterization of A53T mice reveals early and late stage deficits related to Parkinson's disease.

scientific article

Beyond barcodes: complex DNA taxonomy of a South Pacific Island radiation

scientific article published in April 2006

Biodilution of heavy metals in a stream macroinvertebrate food web: evidence from stable isotope analysis

scientific article published on 15 February 2008

Biodiversity effects on ecosystem functioning: emerging issues and their experimental test in aquatic environments

scientific article published in 2004

City-Dwellers and Country Folks: Lack of Population Differentiation Along an Urban-Rural Gradient in the Mosquito Culex pipiens (Diptera: Culicidae).

scientific article published in September 2017

Climate-induced forest dieback drives compositional changes in insect communities that are more pronounced for rare species

scientific article published on 18 January 2022

Colonization and diversification of aquatic insects on three Macaronesian archipelagos using 59 nuclear loci derived from a draft genome

Colonization and diversification of aquatic insects on three Macaronesian archipelagos using 59 nuclear loci derived from a draft genome.

scientific article

Combining the 5.8S and ITS2 to improve classification of fungi

scientific article published in 2019

DNA metabarcoding of unfractionated water samples relates phyto-, zoo- and bacterioplankton dynamics and reveals a single-taxon bacterial bloom

scientific article

DNA-based association of adults and larvae in Baetidae (Ephemeroptera) with the description of a new genusAdnoptilumin Madagascar

scientific article published in September 2010

DNA-based confirmation that the parasitic wasp Cotesia glomerata (Braconidae, Hymenoptera) is a new threat to endemic butterflies of the Canary Islands

scholarly article by Aurel I. Lozan et al published 24 November 2007 in Conservation Genetics

DNA-based species delineation in tropical beetles using mitochondrial and nuclear markers

scientific article published in October 2005

DNA-based taxonomy for associating adults and larvae in multi-species assemblages of chafers (Coleoptera: Scarabaeidae).

scientific article published on 2 March 2007

Daphnia galeata responds to the exposure to an ichthyosporean gut parasite by down-regulation of immunity and lipid metabolism

scientific article published on 14 December 2018

Dietary changes in predators and scavengers in a nocturnally illuminated riparian ecosystem

scientific article published in 2018

Effects of predation pressure and resource use on morphological divergence in omnivorous prey fish.

scientific article

Encapsulation of Anguillicola crassus reduces the abundance of adult parasite stages in the European eel (Anguilla anguilla)

scientific article published on 03 December 2020

Endemism and diversification in freshwater insects of Madagascar revealed by coalescent and phylogenetic analysis of museum and field collections

scientific article

Environmental DNA, hydrochemistry and stable water isotopes as integrative tracers of urban ecohydrology

Environmental effects of the Kakhovka Dam destruction by warfare in Ukraine

Scholarly article and data set, 2025

Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica

scientific article published in 2021

Evolution and island endemism of morphologically crypticBaetisandCloeonspecies (Ephemeroptera, Baetidae) on the Canary Islands and Madeira

Evolutionary criteria outperform operational approaches in producing ecologically relevant fungal species inventories ⬇️

scientific article published on December 24, 2010

Experimental infection with Anguillicola crassus alters immune gene expression in both spleen and head kidney of the European eel (Anguilla anguilla)

scientific article published on 05 January 2019

Freshwater biodiversity and aquatic insect diversification

scientific article

Gene expression response to a nematode parasite in novel and native eel hosts

scientific article published on 21 October 2019

Genetic contributions to the study of taxonomy, ecology, and evolution of mayflies (Ephemeroptera): review and future perspectives

scientific article published in November 2009

Genetic mixing from enhancement stocking in commercially exploited vendace populations

scientific article published in 2009

Genetic population structure of sympatric and allopatric populations of Baltic ciscoes (Coregonus albula complex, Teleostei, Coregonidae).

scientific article

High habitat-specificity in fungal communities in oligo-mesotrophic, temperate Lake Stechlin (North-East Germany)

article

How genomics can help biodiversity conservation

Impacts of mountain forest dieback on aquatic insect communities: A DNA metabarcoding analysis of samples from the Bavarian Forest

scientific article published in 2021

In-depth approach to river restoration

scientific article published on 01 August 2019

Integrating molecular tools into freshwater ecology: developments and opportunities

Interactions between diurnal winds and floodplain mosaics control the insect boundary layer in a river corridor

scientific article published in 2023

Large-scale sampling of the freshwater microbiome suggests pollution-driven ecosystem changes

scientific article published in 2022

Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments

scientific article published on 23 September 2018

Microbial diversity and community respiration in freshwater sediments influenced by artificial light at night

scientific article

Molecular phylogeny and timing of diversification in Alpine Rhithrogena (Ephemeroptera: Heptageniidae)

scientific article

Mutual Facilitation Among Invading Nuttall's Waterweed and Quagga Mussels ⬇️

scientific article published on 26 June 2019

Occurrence and host preferences of Anopheles maculipennis group mosquitoes in England and Wales

scientific article

Out of the Dark: Establishing a Large-Scale Field Experiment to Assess the Effects of Artificial Light at Night on Species and Food Webs

article by Stephanie Holzhauer et al published 20 November 2015 in Sustainability

Persisting roadblocks in arthropod monitoring using non-destructive metabarcoding from collection media of passive traps

scientific article published in 2023

Phylogenomic insights into the early diversification of fungi

scientific article published in August 2022

PriSeT: Efficient De Novo Primer Discovery

scientific article published on 07 April 2020

Processing of native and exotic leaf litter in two Idaho (U.S.A.) streams

Rapid growth and the evolution of complete metamorphosis in insects

Revisiting global trends in freshwater insect biodiversity

scientific article

Revisiting the phylogenetic position of Caullerya mesnili (Ichthyosporea), a common Daphnia parasite, based on 22 protein-coding genes

scientific article published on 17 June 2020

SMART Research: Toward Interdisciplinary River Science in Europe

scientific article published in 2020

Safeguarding Freshwater Life Beyond 2020: Recommendations for the New Global Biodiversity Framework from the European Experience

Safeguarding freshwater life beyond 2020: Recommendations for the new global biodiversity framework from the European experience

scientific article

Sampling Error Does Not Invalidate the Yule-Coalescent Model for Species Delimitation. A Response to Lohse (2009)

scientific article published in 2009

Sex-specific gene expression in the mosquito Culex pipiens f. molestus in response to artificial light at night.

scientific article published on 5 January 2016

Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment

scientific article

Spatial and phylogenetic structure of Alpine stonefly assemblages across seven habitats using DNA-species

scientific article published in 2023

Spatial heterogeneity in the Mediterranean Biodiversity Hotspot affects barcoding accuracy of its freshwater fishes.

scientific article

Speciation and DNA barcodes: testing the effects of dispersal on the formation of discrete sequence clusters

scientific article

Stream ecosystem response to multiple experimental floods from a reservoir

scientific article published in 2004

Temperature drives variation in flying insect biomass across a German malaise trap network

scientific article published on 20 November 2021

Temporal dynamics of freshwater planktonic parasites inferred using a DNA metabarcoding time-series

The Alliance for Freshwater Life : A global call to unite efforts for freshwater biodiversity science and conservation

scientific article published in August 2018

The effect of geographical scale of sampling on DNA barcoding ⬇️

scientific article

The era of reference genomes in conservation genomics

scientific article published in March 2022

The haplotype-resolved Prymnesium parvum (type B) microalga genome reveals the genetic basis of its fish-killing toxins

The towering orogeny of New Guinea as a trigger for arthropod megadiversity

scientific article

Three mitochondrial genomes of early-winged insects (Ephemeroptera: Baetidae and Leptophlebiidae)

scientific article published in 2021

Toward a DNA taxonomy of Alpine Rhithrogena (Ephemeroptera: Heptageniidae) using a mixed Yule-coalescent analysis of mitochondrial and nuclear DNA

scientific article

Trans-oceanic and endemic origins of the small minnow mayflies (Ephemeroptera, Baetidae) of Madagascar

scientific article (publication date: 7 September 2005)

Whole-community DNA barcoding reveals a spatio-temporal continuum of biodiversity at species and genetic levels

scientific article

discomark: nuclear marker discovery from orthologous sequences using draft genome data.

scientific article

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