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List of works by Pavel Neumann

A reference genome for pea provides insight into legume genome evolution

scientific article published on 02 September 2019

A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons ⬇️

scientific article published on April 29, 2012

Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

scientific article

Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea

scientific article published on 20 October 2015

Centromeres Off the Hook: Massive Changes in Centromere Size and Structure Following Duplication of CenH3 Gene in Fabeae Species

scientific article published on 13 March 2015

Characterization of Stowaway MITEs in pea (Pisum sativum L.) and identification of their potential master elements

scientific article published on October 2005

Chromosome sorting and PCR-based physical mapping in pea (Pisum sativum L.).

scientific article published on 01 January 2002

Complex sequence organization of heterochromatin in the holocentric plant <i>Cuscuta europaea</i> elucidated by the computational analysis of nanopore reads

scientific article published on 22 April 2021

Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies.

scientific article

Epigenetic Histone Marks of Extended Meta-Polycentric Centromeres of Lathyrus and Pisum Chromosomes

scientific article

Experimental evidence for splicing of intron-containing transcripts of plant LTR retrotransposon Ogre

scientific article published on 2 September 2008

Flow sorting and sequencing meadow fescue chromosome 4F.

scientific article published on 4 October 2013

Genome-wide analysis of repeat diversity across the family Musaceae

scientific article

Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice

scientific article published on 06 May 2010

Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2

scientific article published on 23 October 2020

Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data

scientific article

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

scientific article

Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced.

scientific article

Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin.

scientific article

Hypervariable 3' UTR region of plant LTR-retrotransposons as a source of novel satellite repeats

scientific article published on 27 June 2009

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.

scientific article published on 25 November 2015

Isolation of chromosomes from Pisum sativum L. hairy root cultures and their analysis by flow cytometry

article

Karyotype analysis of four Vicia species using in situ hybridization with repetitive sequences.

scientific article

Long-range organization of plant satellite repeats investigated using strand-specific FISH.

scientific article

Microarray-based survey of repetitive genomic sequences in Vicia spp.

scientific article

Molecular and cytogenetic analysis of repetitive DNA in pea (pisum sativum L.).

scientific article

Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia

scientific article

Ogre elements--a distinct group of plant Ty3/gypsy-like retrotransposons

scientific article

PIGY, a new plant envelope-class LTR retrotransposon.

scientific article

Plant centromeric retrotransposons: a structural and cytogenetic perspective

scientific article

Repeat-sequence turnover shifts fundamentally in species with large genomes

scientific article published on 19 October 2020

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.

scientific article published in February 2013

Repeatless and repeat-based centromeres in potato: implications for centromere evolution.

scientific article published on 11 September 2012

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

scientific article (publication date: 21 November 2007)

Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing

scientific article

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences.

scientific article

Sgt1, but not Rar1, is essential for the RB-mediated broad-spectrum resistance to potato late blight

scientific article

Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement

scientific article

Stretching the rules: monocentric chromosomes with multiple centromere domains

scientific article

Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice

scientific article published on 22 December 2004

Super-Resolution Microscopy Reveals Diversity of Plant Centromere Architecture ⬇️

scientific article published on 15 May 2020

Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

article

The centromeric retrotransposons of rice are transcribed and differentially processed by RNA interference

scientific article published on 3 April 2007

The giant diploid faba genome unlocks variation in a global protein crop

scientific article published in 2023

The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization.

scientific article published on 12 December 2012

Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice

scientific article published on 20 September 2006

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