List of works - Fabio C. L. Almeida

(1)H, (13)C and (15)N chemical shift assignments of Saccharomyces cerevisiae type 1 thioredoxin in the oxidized state by solution NMR spectroscopy

scientific article published on 14 August 2017

1 H, 13 C and 15 N Resonance Assignments for the Reduced Forms of Thioredoxin 1 and 2 from S. cerevisiae

scientific article published on 01 January 2006

1H Nuclear Magnetic Resonance Metabolomics of Plasma Unveils Liver Dysfunction in Dengue Patients

scientific article published on 08 June 2016

1H, 13C and 15N resonance assignments and second structure information of Fag s 1: Fagales allergen from Fagus sylvatica

scientific article published on 20 August 2015

1H, 13C and 15N resonance assignments and second structure information of Gad m 1: a β-parvalbumin allergen from Atlantic cod (Gadus morhua)

scientific article published on 15 May 2012

1H, 15N and 13C resonance assignments of the RRM1 domain of the key post-transcriptional regulator HuR

scientific article published on 09 December 2014

A Cross-Reactive Human Single-Chain Antibody for Detection of Major Fish Allergens, Parvalbumins, and Identification of a Major IgE-Binding Epitope

scientific article published on 18 November 2015

A minor beta-structured conformation is the active state of a fusion peptide of vesicular stomatitis virus glycoprotein

scientific article published in April 2008

An Overview on Protein Structure Determination by NMR: Historical and Future Perspectives of the use of Distance Geometry Methods

Antibody Binding Modulates Conformational Exchange in Domain III of Dengue Virus E Protein

scientific article

Backbone and side chain 1H, 15N and 13C assignments of a putative peptidyl prolyl cis–trans isomerase FKBP12 from Mycobacterium tuberculosis

scientific article published on 16 March 2019

Backbone assignment of ribose-5-phosphate isomerase of Mycobacterium tuberculosis (MtRpiB)

scientific article published on 06 February 2020

Backbone dynamics of the antifungal Psd1 pea defensin and its correlation with membrane interaction by NMR spectroscopy.

scientific article published on 24 July 2009

Bet v 1--a Trojan horse for small ligands boosting allergic sensitization?

scientific article

Biophysical Studies on BEX3, the p75NTR-Associated Cell Death Executor, Reveal a High-Order Oligomer with Partially Folded Regions

scientific article published on 18 September 2015

Biophysical and dynamic characterization of a fine-tuned binding of the human Respiratory Syncytial Virus M2-1 core domain to long RNAs

scientific article published on 16 September 2020

Conformational Dynamics of a Cysteine-Stabilized Plant Defensin Reveals an Evolutionary Mechanism to Expose Hydrophobic Residues

article

Conformational Dynamics of a Cysteine-Stabilized Plant Defensin Reveals an Evolutionary Mechanism to Expose Hydrophobic Residues

scientific article published in 2018

Conformational selection, dynamic restriction and the hydrophobic effect coupled to stabilization of the BIR3 domain of the human X-linked inhibitor of apoptosis protein by the tetrapeptide AVPI ⬇️

scientific article published on August 17, 2010

Controlling {beta}-amyloid oligomerization by the use of naphthalene sulfonates: trapping low molecular weight oligomeric species

scientific article

Conversion of wild-type p53 core domain into a conformation that mimics a hot-spot mutant

scientific article published on October 2003

Correlation between conformation and antibody binding: NMR structure of cross-reactive peptides from T. cruzi, human and L. braziliensis

scientific article (publication date: 27 February 2004)

DIADECOMP: A new approach to analyze decompositions from projection spectroscopy

scientific article

Dissection of the water cavity of yeast thioredoxin 1: the effect of a hydrophobic residue in the cavity

scientific article published on 9 April 2015

Dynamics of Zika Virus Capsid Protein in Solution: The Properties and Exposure of the Hydrophobic Cleft Are Controlled by the α-Helix 1 Sequence

scientific article published on 6 May 2019

Effect of micelle interface on the binding of anticoccidial PW2 peptide

scientific article

Effectiveness of image-guided radiotherapy for locally advanced rectal cancer

scientific article published on 17 September 2010

Effectiveness of prophylactic retropharyngeal lymph node irradiation in patients with locally advanced head and neck cancer

scientific article

Feasibility of intensity-modulated and image-guided radiotherapy for functional organ preservation in locally advanced laryngeal cancer

scientific article

Feasibility of tomotherapy to reduce normal lung and cardiac toxicity for distal esophageal cancer compared to three-dimensional radiotherapy

scientific article

Feasibility of tomotherapy-based image-guided radiotherapy for locally advanced oropharyngeal cancer

scientific article

From combinatorial peptide selection to drug prototype (I): targeting the vascular endothelial growth factor receptor pathway

scientific article

Heat stability of Proteobacterial PII protein facilitate purification using a single chromatography step.

scientific article

Herpes simplex type 1 activates glycolysis through engagement of the enzyme 6-phosphofructo-1-kinase (PFK-1).

scientific article

High-risk (HPV16) human papillomavirus E7 oncoprotein is highly stable and extended, with conformational transitions that could explain its multiple cellular binding partners

scientific article published in August 2002

High-throughput screening of structural proteomics targets using NMR.

scientific article

Hydration and conformational equilibrium in yeast thioredoxin 1: implication for H(+) exchange

scientific article

Identification of regions involved in substrate binding and dimer stabilization within the central domains of yeast Hsp40 Sis1.

scientific article

Image-guided radiotherapy and -brachytherapy for cervical cancer

scientific article published on 17 March 2015

Image-guided radiotherapy for locally advanced head and neck cancer

scientific article published on 8 July 2013

Implications of protein conformational diversity for binding and development of new biological active compounds.

scientific article

In-Cell NMR spectroscopy: inhibition of autologous protein expression reduces Escherichia coli lysis.

scientific article

Inhibition of energy-producing pathways of HepG2 cells by 3-bromopyruvate

scientific article

Interaction of the Dengue virus fusion peptide with membranes assessed by NMR: The essential role of the envelope protein Trp101 for membrane fusion

scientific article published on 17 July 2009

Longitudinal evaluation of salivary profile from children with dental caries before and after treatment

Mapping the interactions between a major pollen allergen and human IgE antibodies

scientific article

Metabolomic Analysis Reveals Vitamin D-induced Decrease in Polyol Pathway and Subtle Modulation of Glycolysis in HEK293T Cells

scientific article published on 25 August 2017

Modeling the interaction of dodecylphosphocholine micelles with the anticoccidial peptide PW2 guided by NMR data.

scientific article

Moniliophthora perniciosa necrosis- and ethylene-inducing protein 2 (MpNep2) as a metastable dimer in solution: structural and functional implications

scientific article

NMR assignment of free 1H, 15N and 13C-Grb2-SH2 domain

scientific article published on 26 April 2019

NMR solution structure of the reduced form of thioredoxin 1 from Sacharomyces cerevisiae

scientific article

NMR solution structure of the reduced form of thioredoxin 2 from Saccharomyces cerevisiae

scientific article

NMR structure determination of Ixolaris and Factor X interaction reveals a noncanonical mechanism of Kunitz inhibition

scientific article published on 27 May 2019

NMR structure of PW2 bound to SDS micelles. A tryptophan-rich anticoccidial peptide selected from phage display libraries

scientific article

Novel Zn2+-binding Sites in Human Transthyretin: IMPLICATIONS FOR AMYLOIDOGENESIS AND RETINOL-BINDING PROTEIN RECOGNITION

scientific article

Nuclear magnetic resonance solution structure of Pisum sativum defensin 2 provides evidence for the presence of hydrophobic surface-clusters

scientific article published on 05 August 2019

PHD domain from human SHPRH

scientific article

Peptide:lipid ratio and membrane surface charge determine the mechanism of action of the antimicrobial peptide BP100. Conformational and functional studies.

scientific article published on 15 April 2014

Portrayal of complex dynamic properties of sugarcane defensin 5 by NMR: multiple motions associated with membrane interaction

scientific article

Production of the active antifungal Pisum sativum defensin 1 (Psd1) in Pichia pastoris: overcoming the inefficiency of the STE13 protease

scientific article

Retinoic Acid Binding Leads to CRABP2 Rigidification and Dimerization

scientific article published on 07 October 2019

Revealing the properties of plant defensins through dynamics

scientific article

Salivary metabolic profile of children and adolescents after hemodialysis

Salivary metabolite signatures of children with and without dental caries lesions

Selectively labeling the heterologous protein in Escherichia coli for NMR studies: a strategy to speed up NMR spectroscopy.

scientific article

Sequence-specific 1H, 15N and 13C resonance assignments of Art v 1: a proline-rich allergen of Artemisia vulgaris pollen.

scientific article published on 12 March 2009

Solution NMR structures of the antimicrobial peptides phylloseptin-1, -2, and -3 and biological activity: the role of charges and hydrogen bonding interactions in stabilizing helix conformations

scientific article

Solution and high-pressure NMR studies of the structure, dynamics, and stability of the cross-reactive allergenic cod parvalbumin Gad m 1

scientific article

Solution structure of Pisum sativum defensin 1 by high resolution NMR: plant defensins, identical backbone with different mechanisms of action

scientific article

Solvent-induced changes in the photophysical properties of N-alkylphthalimides II. Temperature and acidity effects

Spectroscopic characterization of a truncated hemoglobin from the nitrogen-fixing bacterium Herbaspirillum seropedicae

scientific article published on 12 June 2008

Structural basis for cross-reactivity and conformation fluctuation of the major beech pollen allergen Fag s 1.

scientific article published on 12 July 2018

Structural basis for the interaction of a vascular endothelial growth factor mimic peptide motif and its corresponding receptors

scientific article

Structural basis for the interaction of human β-defensin 6 and its putative chemokine receptor CCR2 and breast cancer microvesicles

scientific article

Structural biology of membrane-acting peptides: conformational plasticity of anticoccidial peptide PW2 probed by solution NMR.

scientific article

Structural meta-analysis of regular human insulin in pharmaceutical formulations

scientific article

Structural studies of MS2 bacteriophage virus particle disassembly by nuclear magnetic resonance relaxation measurements

scientific article published on June 2003

Structure and Membrane Interactions of the Antibiotic Peptide Dermadistinctin K by Multidimensional Solution and Oriented 15N and 31P Solid-State NMR Spectroscopy

scientific article

Structure of a membrane-binding domain from a non-enveloped animal virus: insights into the mechanism of membrane permeability and cellular entry.

scientific article

Structure of the Ebola fusion peptide in a membrane-mimetic environment and the interaction with lipid rafts

scientific article

Structures of the reduced and oxidized state of the mutant D24A of yeast thioredoxin 1: insights into the mechanism for the closing of the water cavity

scientific article

Study of the effect of the peptide loading and solvent system in SPPS by HRMAS-NMR.

scientific article published in September 2005

The bZIP region of the plant transcription factor opaque-2 forms stable homodimers in solution and retains its helical structure upon subunit dissociation

scientific article published in April 2004

Thermodynamic and Structural Characterization of Zwitterionic Micelles of the Membrane Protein Solubilizing Amidosulfobetaine Surfactants ASB-14 and ASB-16

scientific article published on 09 June 2011

Understanding dengue virus capsid protein disordered N-Terminus and pep14-23-based inhibition

scientific article published on 20 November 2014

Virus maturation targets the protein capsid to concerted disassembly and unfolding

scientific article published in May 2000

fd coat protein structure in membrane environments: structural dynamics of the loop between the hydrophobic trans-membrane helix and the amphipathic in-plane helix

scientific article

List of works by Fabio C. L. Almeida

(1)H, (13)C and (15)N chemical shift assignments of Saccharomyces cerevisiae type 1 thioredoxin in the oxidized state by solution NMR spectroscopy

1 H, 13 C and 15 N Resonance Assignments for the Reduced Forms of Thioredoxin 1 and 2 from S. cerevisiae

1H Nuclear Magnetic Resonance Metabolomics of Plasma Unveils Liver Dysfunction in Dengue Patients

1H, 13C and 15N resonance assignments and second structure information of Fag s 1: Fagales allergen from Fagus sylvatica

1H, 13C and 15N resonance assignments and second structure information of Gad m 1: a β-parvalbumin allergen from Atlantic cod (Gadus morhua)

1H, 15N and 13C resonance assignments of the RRM1 domain of the key post-transcriptional regulator HuR

A Cross-Reactive Human Single-Chain Antibody for Detection of Major Fish Allergens, Parvalbumins, and Identification of a Major IgE-Binding Epitope

A minor beta-structured conformation is the active state of a fusion peptide of vesicular stomatitis virus glycoprotein

An Overview on Protein Structure Determination by NMR: Historical and Future Perspectives of the use of Distance Geometry Methods

Antibody Binding Modulates Conformational Exchange in Domain III of Dengue Virus E Protein

Backbone and side chain 1H, 15N and 13C assignments of a putative peptidyl prolyl cis–trans isomerase FKBP12 from Mycobacterium tuberculosis

Backbone assignment of ribose-5-phosphate isomerase of Mycobacterium tuberculosis (MtRpiB)

Backbone dynamics of the antifungal Psd1 pea defensin and its correlation with membrane interaction by NMR spectroscopy.

Bet v 1--a Trojan horse for small ligands boosting allergic sensitization?

Biophysical Studies on BEX3, the p75NTR-Associated Cell Death Executor, Reveal a High-Order Oligomer with Partially Folded Regions

Biophysical and dynamic characterization of a fine-tuned binding of the human Respiratory Syncytial Virus M2-1 core domain to long RNAs

Conformational Dynamics of a Cysteine-Stabilized Plant Defensin Reveals an Evolutionary Mechanism to Expose Hydrophobic Residues

Conformational Dynamics of a Cysteine-Stabilized Plant Defensin Reveals an Evolutionary Mechanism to Expose Hydrophobic Residues

Conformational selection, dynamic restriction and the hydrophobic effect coupled to stabilization of the BIR3 domain of the human X-linked inhibitor of apoptosis protein by the tetrapeptide AVPI ⬇️

Controlling {beta}-amyloid oligomerization by the use of naphthalene sulfonates: trapping low molecular weight oligomeric species

Conversion of wild-type p53 core domain into a conformation that mimics a hot-spot mutant

Correlation between conformation and antibody binding: NMR structure of cross-reactive peptides from T. cruzi, human and L. braziliensis

DIADECOMP: A new approach to analyze decompositions from projection spectroscopy

Dissection of the water cavity of yeast thioredoxin 1: the effect of a hydrophobic residue in the cavity

Dynamics of Zika Virus Capsid Protein in Solution: The Properties and Exposure of the Hydrophobic Cleft Are Controlled by the α-Helix 1 Sequence

Effect of micelle interface on the binding of anticoccidial PW2 peptide

Effectiveness of image-guided radiotherapy for locally advanced rectal cancer

Effectiveness of prophylactic retropharyngeal lymph node irradiation in patients with locally advanced head and neck cancer

Feasibility of intensity-modulated and image-guided radiotherapy for functional organ preservation in locally advanced laryngeal cancer

Feasibility of tomotherapy to reduce normal lung and cardiac toxicity for distal esophageal cancer compared to three-dimensional radiotherapy

Feasibility of tomotherapy-based image-guided radiotherapy for locally advanced oropharyngeal cancer

From combinatorial peptide selection to drug prototype (I): targeting the vascular endothelial growth factor receptor pathway

Heat stability of Proteobacterial PII protein facilitate purification using a single chromatography step.

Herpes simplex type 1 activates glycolysis through engagement of the enzyme 6-phosphofructo-1-kinase (PFK-1).

High-risk (HPV16) human papillomavirus E7 oncoprotein is highly stable and extended, with conformational transitions that could explain its multiple cellular binding partners

High-throughput screening of structural proteomics targets using NMR.

Hydration and conformational equilibrium in yeast thioredoxin 1: implication for H(+) exchange

Identification of regions involved in substrate binding and dimer stabilization within the central domains of yeast Hsp40 Sis1.

Image-guided radiotherapy and -brachytherapy for cervical cancer

Image-guided radiotherapy for locally advanced head and neck cancer

Implications of protein conformational diversity for binding and development of new biological active compounds.

In-Cell NMR spectroscopy: inhibition of autologous protein expression reduces Escherichia coli lysis.

Inhibition of energy-producing pathways of HepG2 cells by 3-bromopyruvate

Interaction of the Dengue virus fusion peptide with membranes assessed by NMR: The essential role of the envelope protein Trp101 for membrane fusion

Longitudinal evaluation of salivary profile from children with dental caries before and after treatment

Mapping the interactions between a major pollen allergen and human IgE antibodies

Metabolomic Analysis Reveals Vitamin D-induced Decrease in Polyol Pathway and Subtle Modulation of Glycolysis in HEK293T Cells

Modeling the interaction of dodecylphosphocholine micelles with the anticoccidial peptide PW2 guided by NMR data.

Moniliophthora perniciosa necrosis- and ethylene-inducing protein 2 (MpNep2) as a metastable dimer in solution: structural and functional implications

NMR assignment of free 1H, 15N and 13C-Grb2-SH2 domain

NMR solution structure of the reduced form of thioredoxin 1 from Sacharomyces cerevisiae

NMR solution structure of the reduced form of thioredoxin 2 from Saccharomyces cerevisiae

NMR structure determination of Ixolaris and Factor X interaction reveals a noncanonical mechanism of Kunitz inhibition

NMR structure of PW2 bound to SDS micelles. A tryptophan-rich anticoccidial peptide selected from phage display libraries

Novel Zn2+-binding Sites in Human Transthyretin: IMPLICATIONS FOR AMYLOIDOGENESIS AND RETINOL-BINDING PROTEIN RECOGNITION

Nuclear magnetic resonance solution structure of Pisum sativum defensin 2 provides evidence for the presence of hydrophobic surface-clusters

PHD domain from human SHPRH

Peptide:lipid ratio and membrane surface charge determine the mechanism of action of the antimicrobial peptide BP100. Conformational and functional studies.

Portrayal of complex dynamic properties of sugarcane defensin 5 by NMR: multiple motions associated with membrane interaction

Production of the active antifungal Pisum sativum defensin 1 (Psd1) in Pichia pastoris: overcoming the inefficiency of the STE13 protease

Retinoic Acid Binding Leads to CRABP2 Rigidification and Dimerization

Revealing the properties of plant defensins through dynamics

Salivary metabolic profile of children and adolescents after hemodialysis

Salivary metabolite signatures of children with and without dental caries lesions

Selectively labeling the heterologous protein in Escherichia coli for NMR studies: a strategy to speed up NMR spectroscopy.

Sequence-specific 1H, 15N and 13C resonance assignments of Art v 1: a proline-rich allergen of Artemisia vulgaris pollen.

Solution NMR structures of the antimicrobial peptides phylloseptin-1, -2, and -3 and biological activity: the role of charges and hydrogen bonding interactions in stabilizing helix conformations

Solution and high-pressure NMR studies of the structure, dynamics, and stability of the cross-reactive allergenic cod parvalbumin Gad m 1

Solution structure of Pisum sativum defensin 1 by high resolution NMR: plant defensins, identical backbone with different mechanisms of action

Solvent-induced changes in the photophysical properties of N-alkylphthalimides II. Temperature and acidity effects

Spectroscopic characterization of a truncated hemoglobin from the nitrogen-fixing bacterium Herbaspirillum seropedicae

Structural basis for cross-reactivity and conformation fluctuation of the major beech pollen allergen Fag s 1.

Structural basis for the interaction of a vascular endothelial growth factor mimic peptide motif and its corresponding receptors

Structural basis for the interaction of human β-defensin 6 and its putative chemokine receptor CCR2 and breast cancer microvesicles

Structural biology of membrane-acting peptides: conformational plasticity of anticoccidial peptide PW2 probed by solution NMR.

Structural meta-analysis of regular human insulin in pharmaceutical formulations

Structural studies of MS2 bacteriophage virus particle disassembly by nuclear magnetic resonance relaxation measurements

Structure and Membrane Interactions of the Antibiotic Peptide Dermadistinctin K by Multidimensional Solution and Oriented 15N and 31P Solid-State NMR Spectroscopy

Structure of a membrane-binding domain from a non-enveloped animal virus: insights into the mechanism of membrane permeability and cellular entry.