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List of works by Mark Jenkinson

A Bayesian Cost Function Applied to Model-Based Registration of Sub-cortical Brain Structures

A Bayesian model of shape and appearance for subcortical brain segmentation

scientific article

A combined post-mortem magnetic resonance imaging and quantitative histological study of multiple sclerosis pathology

scientific article

A consistent relationship between local white matter architecture and functional specialisation in medial frontal cortex

scientific article published on 3 November 2005

A global optimisation method for robust affine registration of brain images

scientific article (publication date: June 2001)

A saliency-based hierarchy for local symmetries

Accurate, robust, and automated longitudinal and cross-sectional brain change analysis

scientific article

Acquisition and voxelwise analysis of multi-subject diffusion data with tract-based spatial statistics

scientific article

Advances in diffusion MRI acquisition and processing in the Human Connectome Project

scientific article

Advances in functional and structural MR image analysis and implementation as FSL

scientific article (publication date: 2004)

Allostatic load as a predictor of grey matter volume and white matter integrity in old age: The Whitehall II MRI study.

scientific article published on 23 April 2018

Alteration to hippocampal volume and shape confined to cannabis dependence: a multi-site study

scholarly article by Yann Chye et al published 18 July 2018 in Addiction Biology

An evaluation of four automatic methods of segmenting the subcortical structures in the brain.

scientific article published on 20 May 2009

Anatomically related grey and white matter abnormalities in adolescent-onset schizophrenia

scientific article published on 13 August 2007

Applying FSL to the FIAC data: model-based and model-free analysis of voice and sentence repetition priming

scientific article

Artificial intelligence for clinical decision support in neurology

scientific article published on 09 July 2020

Assessment of physiological noise modelling methods for functional imaging of the spinal cord.

scientific article published on 8 December 2011

Atlas-Based Improved Prediction of Magnetic Field Inhomogeneity for Distortion Correction of EPI Data

article

Automated lesion segmentation with BIANCA: impact of population-level features, classification algorithm and locally adaptive thresholding

BIANCA (Brain Intensity AbNormality Classification Algorithm): A new tool for automated segmentation of white matter hyperintensities

scientific article published on 8 July 2016

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.

scientific article

Bayesian analysis of neuroimaging data in FSL.

scientific article

Brain surface contraction mapped in first-episode schizophrenia: a longitudinal magnetic resonance imaging study

scientific article published on 08 July 2008

Brainstem functional magnetic resonance imaging: disentangling signal from physiological noise

scientific article published in December 2008

Can correcting feature location in simulated mean climate improve agreement on projected changes?

article

Challenges for machine learning in clinical translation of big data imaging studies

scientific article published in 2022

Classification and characterization of periventricular and deep white matter hyperintensities on MRI: A study in older adults.

scientific article

Color of scents: chromatic stimuli modulate odor responses in the human brain.

scientific article published on 2 February 2005

Combining shape and connectivity analysis: an MRI study of thalamic degeneration in Alzheimer's disease

scientific article published on 8 September 2009

Common genetic variants influence human subcortical brain structures

scientific article

Comparison and Evaluation of Segmentation Techniques for Subcortical Structures in Brain MRI

article

Comprehensive morphometry of subcortical grey matter structures in early-stage Parkinson's disease

scientific article published on 16 July 2013

Conditioned respiratory threat in the subdivisions of the human periaqueductal gray

scientific article published on 27 February 2016

Connectivity-based functional analysis of dopamine release in the striatum using diffusion-weighted MRI and positron emission tomography ⬇️

scientific article published on 02 January 2013

Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project

scientific article published on 14 June 2018

Correcting precipitation feature location in general circulation models

article

Correspondences between retinotopic areas and myelin maps in human visual cortex

scientific article

Corrigendum to “An evaluation of four automatic methods of segmenting the subcortical structures in the brain” [NeuroImage 47 (2009) 1435–1447]

scholarly article published in NeuroImage

Corrigendum to “Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease” [NeuroImage 49 (2010) 1–8]

scholarly article published in NeuroImage

Cross-species cortical alignment identifies different types of anatomical reorganization in the primate temporal lobe

scientific article published on 23 March 2020

Development of a functional magnetic resonance imaging simulator for modeling realistic rigid-body motion artifacts.

scientific article published in August 2006

Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner

scientific article published on 5 April 2011

Distinction of seropositive NMO spectrum disorder and MS brain lesion distribution

scientific article published on 13 March 2013

Edge- and detail-preserving sparse image representations for deformable registration of chest MRI and CT volumes

scientific article published in January 2013

Evaluating and reducing the impact of white matter lesions on brain volume measurements

scientific article published on 31 August 2011

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

scientific article published on 13 January 2009

Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge

scientific article

FAST-IT: <i>F</i>ind <i>A S</i>imple <i>T</i>est - <i>I</i>n <i>T</i>IA (transient ischaemic attack): a prospective cohort study to develop a multivariable prediction model for diagnosis of TIA through proteomic discovery and candidate lipid mass sp

scientific article published on 01 April 2022

FSL

scientific article (publication date: 15 August 2012)

Fast, automated, N-dimensional phase-unwrapping algorithm

scientific article published in January 2003

Fast, fully automated global and local magnetic field optimization for fMRI of the human brain

scientific article (publication date: October 2002)

Fully Bayesian spatio-temporal modeling of FMRI data

scientific article

Functional connectomics from resting-state fMRI.

scientific article

Functional subdivision of the human periaqueductal grey in respiratory control using 7 tesla fMRI.

scientific article published on 19 February 2015

General multilevel linear modeling for group analysis in FMRI.

scientific article published in October 2003

Generalised Overlap Measures for Assessment of Pairwise and Groupwise Image Registration and Segmentation

article

Gray matter volume is associated with rate of subsequent skill learning after a long term training intervention

scientific article

Human Connectome Project informatics: quality control, database services, and data visualization

scientific article

Identification of common variants associated with human hippocampal and intracranial volumes

scientific article published on 15 April 2012

Image Processing and Quality Control for the first 10,000 Brain Imaging Datasets from UK Biobank

Imaging dopamine receptors in humans with [11C]-(+)-PHNO: dissection of D3 signal and anatomy

scientific article

Improved optimization for the robust and accurate linear registration and motion correction of brain images

scientific article (publication date: October 2002)

In vivo identification of human cortical areas using high-resolution MRI: an approach to cerebral structure-function correlation.

scholarly article

Increasing the detectability of external influence on precipitation by correcting feature location in GCMs

article

Independent anatomical and functional measures of the V1/V2 boundary in human visual cortex

scientific article published on 11 February 2005

Integrating temporal information with a non-rigid method of motion correction for functional magnetic resonance images

Large-scale probabilistic functional modes from resting state fMRI

scientific article

Lesion probability mapping to explain clinical deficits and cognitive performance in multiple sclerosis

scientific article published on 21 December 2010

Longitudinal and cross-sectional analysis of atrophy in Alzheimer's disease: cross-validation of BSI, SIENA and SIENAX.

scientific article

MIND: modality independent neighbourhood descriptor for multi-modal deformable registration

scientific article published on 31 May 2012

MR-DTI and PET multimodal imaging of dopamine release within subdivisions of basal ganglia

scholarly article by A Tziortzi et al published 23 September 2011 in Journal of Physics: Conference Series

MRF-based deformable registration and ventilation estimation of lung CT.

scientific article published on 26 February 2013

MRI Brain T1 Relaxation Time Changes in MS Patients Increase Over Time in Both the White Matter and the Cortex

article published in 2003

MRI brain T1 relaxation time changes in MS patients increase over time in both the white matter and the cortex

scientific article published in July 2003

MSM: a new flexible framework for Multimodal Surface Matching

scientific article published on 2 June 2014

Magnetic resonance imaging in late-life depression: vascular and glucocorticoid cascade hypotheses

scientific article published in July 2012

Manifestations of early brain recovery associated with abstinence from alcoholism

scientific article

Meaningful design and contrast estimability in FMRI.

scientific article published on 27 October 2006

Methods for Tractography-Driven Surface Registration of Brain Structures

article by Aleksandar Petrović et al published 2009 in Lecture Notes in Computer Science

Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference

Motion Correction and Parameter Estimation in dceMRI Sequences: Application to Colorectal Cancer

Multilevel linear modelling for FMRI group analysis using Bayesian inference.

scientific article published in April 2004

Multimodal surface matching with higher-order smoothness constraints

scientific article published on 31 October 2017

Neuroanatomy of impaired self-awareness in Alzheimer's disease and mild cognitive impairment

scientific article published on 8 May 2012

Non-Rigid Motion Estimation and Spatio-Temporal Realignment in FMRI

Non-local Shape Descriptor: A New Similarity Metric for Deformable Multi-modal Registration

article

Normalized accurate measurement of longitudinal brain change

scientific article

Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): method and validation on clinical data

scientific article

Novel genetic loci associated with hippocampal volume

scientific article published on 18 January 2017

Novel genetic loci underlying human intracranial volume identified through genome-wide association

scientific article (publication date: 3 October 2016)

Optimization of static field homogeneity in human brain using diamagnetic passive shims

scientific article published on November 2002

Optimizing RetroICor and RetroKCor corrections for multi-shot 3D FMRI acquisitions.

scientific article published on 7 September 2013

Optimizing full-brain coverage in human brain MRI through population distributions of brain size

scientific article published on 18 April 2014

Optimizing parameter choice for FSL-Brain Extraction Tool (BET) on 3D T1 images in multiple sclerosis

scientific article

Performance of single spin-echo and doubly refocused diffusion-weighted sequences in the presence of eddy current fields with multiple components

Perturbation method for magnetic field calculations of nonconductive objects

scientific article published in September 2004

Physiological noise in brainstem FMRI.

scientific article published on 04 October 2013

Physiological noise modelling for spinal functional magnetic resonance imaging studies.

scientific article published on 20 September 2007

Protocol to determine the optimal intraoral passive shim for minimisation of susceptibility artifact in human inferior frontal cortex

scientific article published in August 2003

Quantifying the pattern of optic tract degeneration in human hemianopia

scientific article published on 25 October 2013

Recommendations to improve imaging and analysis of brain lesion load and atrophy in longitudinal studies of multiple sclerosis

scientific article

Reducing distortions in diffusion-weighted echo planar imaging with a dual-echo blip-reversed sequence

scientific article

Resting functional connectivity reveals residual functional activity in Alzheimer's disease

scientific article published on 28 May 2013

Simulating the effects of time-varying magnetic fields with a realistic simulated scanner

scientific article published on 24 April 2010

Social Network Size Affects Neural Circuits in Macaques

scientific article

Stimulus site and modality dependence of functional activity within the human spinal cord.

scientific article published in May 2012

Structural MRI changes detectable up to ten years before clinical Alzheimer's disease

scientific article published on 22 July 2011

Structural and functional bases of visuospatial associative memory in older adults

scientific article published on 9 August 2012

Structural changes of the brain in rheumatoid arthritis

scientific article published in February 2012

Study protocol: The Whitehall II imaging sub-study

scientific article (publication date: 30 May 2014)

Target identification for stereotactic thalamotomy using diffusion tractography.

scientific article

Targeting ASIC1 in primary progressive multiple sclerosis: evidence of neuroprotection with amiloride

scientific article published on January 2013

Temporally-independent functional modes of spontaneous brain activity

scientific article published on 7 February 2012

Textural mutual information based on cluster trees for multimodal deformable registration

The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data

scientific article

The Impact of Heterogeneity and Uncertainty on Prediction of Response to Therapy Using Dynamic MRI Data

article by Manav Bhushan et al published 2013 in Lecture Notes in Computer Science

The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction

scientific article published on 30 January 2018

The effect of hypointense white matter lesions on automated gray matter segmentation in multiple sclerosis

scientific article

The minimal preprocessing pipelines for the Human Connectome Project

scientific article published on 11 May 2013

The motor cortex shows adaptive functional changes to brain injury from multiple sclerosis

scientific article published on 01 May 2000

Towards Realtime Multimodal Fusion for Image-Guided Interventions Using Self-similarities

article

Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data

scientific article (publication date: 15 July 2006)

Two-dimensional population map of cortical connections in the human internal capsule

scientific article published in January 2007

Using Arterial Spin Labelling to Investigate Spontaneous and Evoked Ongoing Musculoskeletal Pain

Variability in fMRI: a re-examination of inter-session differences

scientific article published in March 2005

White Matter Imaging Correlates of Early Cognitive Impairment Detected by the Montreal Cognitive Assessment After Transient Ischemic Attack and Minor Stroke

scientific article published on 9 May 2017

White matter and lesion T1 relaxation times increase in parallel and correlate with disability in multiple sclerosis

scientific article published in September 2002

Whole-brain magnetic resonance spectroscopic imaging measures are related to disability in ALS

scientific article published on 16 January 2013

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