List of works - Gordon G Simpson

2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

scientific article published on 01 March 2021

An allelic series reveals essential roles for FY in plant development in addition to flowering-time control

scientific article

Arabidopsis RNA immunoprecipitation

scientific article published on 27 March 2009

Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis ⬇️

scientific article published on 15 August 2013

Crystal Structure of the SPOC Domain of the Arabidopsis Flowering Regulator FPA.

scientific article

Detection and Mitigation of Spurious Antisense RNA-seq Reads with RoSA

scholarly article published 26 September 2018

Enter exitrons

scientific article published on 7 July 2015

FY is an RNA 3' end-processing factor that interacts with FCA to control the Arabidopsis floral transition

scientific article published in June 2003

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

scientific article

Identifying differential isoform abundance with RATs: a universal tool and a warning

Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.

scientific article

Message ends: RNA 3' processing and flowering time control

scientific article published on 21 December 2013

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and mA modification

scientific article published on 14 January 2020

New frontiers in plant development: from genes to phenotype

scientific article published in September 2002

Noncanonical translation initiation of the Arabidopsis flowering time and alternative polyadenylation regulator FCA.

scientific article published on 12 November 2010

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment

scientific article published on 23 July 2015

The Arabidopsis epitranscriptome

scientific article

The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation

scientific article

The spen family protein FPA controls alternative cleavage and polyadenylation of RNA.

scientific article

Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA

scientific article published on 27 April 2021

List of works by Gordon G Simpson

2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

An allelic series reveals essential roles for FY in plant development in addition to flowering-time control

Arabidopsis RNA immunoprecipitation

Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis ⬇️

Crystal Structure of the SPOC Domain of the Arabidopsis Flowering Regulator FPA.

Detection and Mitigation of Spurious Antisense RNA-seq Reads with RoSA

Enter exitrons

FY is an RNA 3' end-processing factor that interacts with FCA to control the Arabidopsis floral transition

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

Identifying differential isoform abundance with RATs: a universal tool and a warning

Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.

Message ends: RNA 3' processing and flowering time control

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and mA modification

New frontiers in plant development: from genes to phenotype

Noncanonical translation initiation of the Arabidopsis flowering time and alternative polyadenylation regulator FCA.

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment

The Arabidopsis epitranscriptome

The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation

The spen family protein FPA controls alternative cleavage and polyadenylation of RNA.

Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA