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List of works by Shikai Liu

A Genome-Wide Association Study Identifies Multiple Regions Associated with Head Size in Catfish

scientific article published on 24 August 2016

A Genome-Wide Association Study Reveals That Genes with Functions for Bone Development Are Associated with Body Conformation in Catfish

scientific article

A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance

scientific article

A pilot study for channel catfish whole genome sequencing and de novo assembly

scientific article

Alternative complement pathway of channel catfish (Ictalurus punctatus): Molecular characterization, mapping and expression analysis of factors Bf/C2 and Df ⬇️

scientific article published on November 23, 2011

Analysis of 52 Rab GTPases from channel catfish and their involvement in immune responses after bacterial infections

scientific article published on 7 February 2014

Analysis of apolipoprotein genes and their involvement in disease response of channel catfish after bacterial infection

scientific article published on 15 September 2016

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies

scientific article

Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish

scientific article

Channel catfish hemoglobin genes: identification, phylogenetic and syntenic analysis, and specific induction in response to heat stress

scientific article published on 28 November 2013

Characterization and expression analysis of microRNAs in the tube foot of sea cucumber Apostichopus japonicus

scientific article

Characterization of fifteen SNP markers by mining EST in sea cucumber, Apostichopus japonicus

Claudin multigene family in channel catfish and their expression profiles in response to bacterial infection and hypoxia as revealed by meta-analysis of RNA-Seq datasets

scientific article published on 21 January 2015

Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments

scientific article published on 13 February 2018

Comparative genomic analysis of catfish linkage group 8 reveals two homologous chromosomes in zebrafish and other teleosts with extensive inter-chromosomal rearrangements ⬇️

scientific article published on June 10, 2013

Comparative transcriptome analysis of papilla and skin in the sea cucumber, Apostichopus japonicus

scientific article published on 07 March 2016

Comparative transcriptome analysis of two oysters, Crassostrea gigas and Crassostrea hongkongensis provides insights into adaptation to hypo-osmotic conditions

scientific article

Comparative transcriptome analysis reveals conserved branching morphogenesis related genes involved in chamber formation of catfish swimbladder

scientific article

Complement regulatory protein genes in channel catfish and their involvement in disease defense response

scientific article published on 22 June 2015

Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish

scientific article

DExD/H-box RNA helicase genes are differentially expressed between males and females during the critical period of male sex differentiation in channel catfish

scientific article published on March 2017

Development of a 690 K SNP array in catfish and its application for genetic mapping and validation of the reference genome sequence

scientific article published on 12 January 2017

Development of the catfish 250K SNP array for genome-wide association studies

scientific article

Effect of nutrient restriction and re-feeding on calpain family genes in skeletal muscle of channel catfish (Ictalurus punctatus)

scientific article

Effects of CRISPR/Cas9 dosage on TICAM1 and RBL gene mutation rate, embryonic development, hatchability and fry survival in channel catfish

scientific article published in Scientific Reports

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote ⬇️

scientific article published on November 5, 2012

Expression of Bcl-2 genes in channel catfish after bacterial infection and hypoxia stress

scientific article published on 25 June 2016

Expression of heat shock protein 90 genes during early development and infection in Megalobrama amblycephala and evidence for adaptive evolution in teleost ⬇️

scientific article published on August 15, 2013

Expression of nitric oxide synthase (NOS) genes in channel catfish is highly regulated and time dependent after bacterial challenges

scientific article published on 18 February 2014

Expression of tumor suppressor genes in channel catfish after bacterial infections

scientific article published on 16 October 2014

Four lysozymes (one c-type and three g-type) in catfish are drastically but differentially induced after bacterial infection

scientific article published on 29 April 2013

GWAS analysis of QTL for enteric septicemia of catfish and their involved genes suggest evolutionary conservation of a molecular mechanism of disease resistance.

scientific article published on 8 November 2016

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

scientific article

Generation of physical map contig-specific sequences useful for whole genome sequence scaffolding

scientific article

Genome Structural Variation Landscape and Its Selection Signatures in the Fast-growing Strains of the Pacific Oyster, Crassostrea gigas

scientific article published in 2021

Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation

Genome-Wide Association Study Reveals Multiple Novel QTL Associated with Low Oxygen Tolerance in Hybrid Catfish

scientific article published on 10 June 2017

Genome-Wide Identification, Characterization and Phylogenetic Analysis of 50 Catfish ATP-Binding Cassette (ABC) Transporter Genes ⬇️

scientific article published on May 16, 2013

Genome-wide identification of Hsp70 genes in channel catfish and their regulated expression after bacterial infection

scientific article published on 13 December 2015

Genome-wide identification of hsp40 genes in channel catfish and their regulated expression after bacterial infection

scientific article published on 26 December 2014

Genomic organization and evolution of olfactory receptors and trace amine-associated receptors in channel catfish, Ictalurus punctatus

scientific article

Genomic signatures of artificial selection in the Pacific oyster, <i>Crassostrea gigas</i>

scientific article published on 02 September 2021

High throughput sequencing of small RNAs transcriptomes in two Crassostrea oysters identifies microRNAs involved in osmotic stress response

scientific article

High-Density Genetic Mapping with Interspecific Hybrids of Two Sea Urchins, Strongylocentrotus nudus and S. intermedius, by RAD Sequencing

scientific article published on 23 September 2015

Historical demography of common carp estimated from individuals collected from various parts of the world using the pairwise sequentially markovian coalescent approach

scientific article published on 3 January 2018

Hsp90, Hsp60 and sHsp families of heat shock protein genes in channel catfish and their expression after bacterial infections

scientific article published on 27 March 2015

Identification and Characterization of MicroRNAs from Longitudinal Muscle and Respiratory Tree in Sea Cucumber (Apostichopus japonicus) Using High-Throughput Sequencing

scientific article published on 05 August 2015

Identification and analysis of genome-wide SNPs provide insight into signatures of selection and domestication in channel catfish (Ictalurus punctatus).

scientific article

Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus)

scientific article

Identification and expression analysis of 26 oncogenes of the receptor tyrosine kinase family in channel catfish after bacterial infection and hypoxic stress

scientific article published on 14 February 2015

Identification of NF-κB related genes in channel catfish and their expression profiles in mucosal tissues after columnaris bacterial infection

scientific article published on 4 January 2017

Identification of novel genes significantly affecting growth in catfish through GWAS analysis

scientific article published on 12 December 2017

Identification, annotation and expression analysis of 29 Rho GTPase genes from channel catfish (Ictalurus punctatus) after bacterial infections

scientific article published on 17 October 2016

Identification, phylogeny and expression analysis of suppressors of cytokine signaling in channel catfish

scientific article published on 30 December 2014

JAK and STAT members in channel catfish: Identification, phylogenetic analysis and expression profiling after Edwardsiella ictaluri infection

scientific article

Large-scale synthesis and microwave absorption enhancement of actinomorphic tubular ZnO/CoFe2O4 nanocomposites

scientific article

MALAT1-miR-124-RBG2 axis is involved in growth and invasion of HR-HPV-positive cervical cancer cells

scientific article published on 5 August 2015

Male-Biased Genes in Catfish as Revealed by RNA-Seq Analysis of the Testis Transcriptome ⬇️

scientific article published on July 12, 2013

MiR-139-3p induces cell apoptosis and inhibits metastasis of cervical cancer by targeting NOB1.

scientific article published on 06 August 2016

MiR-21 modulates radiosensitivity of cervical cancer through inhibiting autophagy via the PTEN/Akt/HIF-1α feedback loop and the Akt-mTOR signaling pathway

scientific article published on 25 May 2016

MiR-211 inhibits invasion and epithelial-to-mesenchymal transition (EMT) of cervical cancer cells via targeting MUC4.

scientific article

Microfibrillar-associated protein 4 (MFAP4) genes in catfish play a novel role in innate immune responses ⬇️

scientific article published on January 11, 2011

Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish (Ictalurus punctatus).

scientific article

Molecular responses of ceruloplasmin to Edwardsiella ictaluri infection and iron overload in channel catfish (Ictalurus punctatus).

scientific article published on 8 January 2011

Multiple across-strain and within-strain QTLs suggest highly complex genetic architecture for hypoxia tolerance in channel catfish

scientific article

Next generation sequencing yields the complete mitochondrial genome of the striped raphael catfish, Platydoras armatulus (Siluriformes: Doradidae).

scientific article published on 20 October 2014

Pathogen recognition receptors in channel catfish: I. Identification, phylogeny and expression of NOD-like receptors ⬇️

scientific article published on December 16, 2011

Pathogen recognition receptors in channel catfish: II. Identification, phylogeny and expression of retinoic acid-inducible gene I (RIG-I)-like receptors (RLRs) ⬇️

scientific article published on February 28, 2012

Pathogen recognition receptors in channel catfish: IV. Identification, phylogeny and expression analysis of peptidoglycan recognition proteins

scientific article published on 9 May 2014

Preserved miR-361-3p Expression Is an Independent Prognostic Indicator of Favorable Survival in Cervical Cancer

scholarly article by Shikai Liu published in January 2018

RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish ⬇️

scientific article published on April 30, 2013

Retracted: MiR-375 Is Epigenetically Downregulated by HPV-16 E6 Mediated DNMT1 Upregulation and Modulates EMT of Cervical Cancer Cells by Suppressing lncRNA MALAT1

retracted article

Ribosomal protein genes are highly enriched among genes with allele-specific expression in the interspecific F1 hybrid catfish

scientific article published on 08 January 2016

SNP discovery from transcriptome of the swimbladder of Takifugu rubripes

scientific article

Screening of bacterial pathogens associated with mass summer mortality of the Pacific oyster, Crassostrea gigas, in China

scientific article published in 2021

Second-generation genetic linkage map of catfish and its integration with the BAC-based physical map

scientific article

Septin genes in channel catfish (Ictalurus punctatus) and their involvement in disease defense responses

scientific article published on 14 December 2015

Taste receptors and gustatory associated G proteins in channel catfish, Ictalurus punctatus

scientific article published on 23 October 2016

The CC and CXC chemokine receptors in channel catfish (Ictalurus punctatus) and their involvement in disease and hypoxia responses

scientific article

The NCK and ABI adaptor genes in catfish and their involvement in ESC disease response

scientific article published on 21 March 2017

The annotation of repetitive elements in the genome of channel catfish (Ictalurus punctatus).

scientific article

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

scientific article

The chemokinome superfamily in channel catfish: I. CXC subfamily and their involvement in disease defense and hypoxia responses

scientific article published on 2 December 2016

The chemokinome superfamily: II. The 64 CC chemokines in channel catfish and their involvement in disease and hypoxia responses

scientific article published on 18 March 2017

The complete mitochondrial genome of the armored catfish, Hypostomus plecostomus (Siluriformes: Loricariidae).

scientific article published on 20 October 2014

The cytochrome P450 genes of channel catfish: their involvement in disease defense responses as revealed by meta-analysis of RNA-Seq data sets

scientific article

The serpin superfamily in channel catfish: identification, phylogenetic analysis and expression profiling in mucosal tissues after bacterial infections

scientific article published on 12 December 2014

Transciptome analysis of the gill and swimbladder of Takifugu rubripes by RNA-Seq

scientific article

Transcription Analysis for Core Networks of lncRNAs–mRNAs: Implication for Potential Role in Sterility of Crassostrea gigas

scientific article published in 2022

Transcriptional regulation of hypoxia inducible factors alpha (HIF-α) and their inhibiting factor (FIH-1) of channel catfish (Ictalurus punctatus) under hypoxia

scientific article published on 31 December 2013

Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis.

scientific article published on 15 June 2016

Transcriptome analysis of the gill of Takifugu rubripes using Illumina sequencing for discovery of SNPs

scientific article published on 27 March 2014

Transcriptomic signatures of attachment, NF-κB suppression and IFN stimulation in the catfish gill following columnaris bacterial infection ⬇️

scientific article published on June 2, 2012

Transient Receptor Potential (TRP) Channels in the Pacific Oyster (Crassostrea gigas): Genome-Wide Identification and Expression Profiling after Heat Stress between C. gigas and C. angulata

scientific article published in 2021

Whole genome comparative analysis of channel catfish (Ictalurus punctatus) with four model fish species

scientific article

miR-21 modulates resistance of HR-HPV positive cervical cancer cells to radiation through targeting LATS1.

scientific article published on 11 March 2015

miR-375 Modulates Radiosensitivity of HR-HPV-Positive Cervical Cancer Cells by Targeting UBE3A through the p53 Pathway

scientific article published on 30 July 2015

Pinctada phuketensis sp. nov. (Bivalvia, Ostreida, Margaritidae), a new pearl oyster species from Phuket, western coast of Thailand

scientific article published in 2022

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