List of works - Hongkui Zeng

3D Image-Guided Automatic Pipette Positioning for Single Cell Experiments in vivo.

scientific article

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality

scientific article published on 01 July 2018

A collection of genetic mouse lines and related tools for inducible and reversible intersectional misexpression

scientific article published on 04 May 2020

A community-based transcriptomics classification and nomenclature of neocortical cell types

scientific article published on 24 August 2020

A coupled autoencoder approach for multi-modal analysis of cell types ⬇️

scientific article published in January 2019

A gut-to-brain signal of fluid osmolarity controls thirst satiation

scientific article published on 27 March 2019

A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex

scientific article published on 16 December 2019

A mesoscale connectome of the mouse brain

scientific article

A multimodal cell census and atlas of the mammalian primary motor cortex

scientific article

A robot for high yield electrophysiology and morphology of single neurons in vivo

scientific article

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

scientific article published on 31 March 2020

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

scientific article published on 17 May 2021

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

scientific article

Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines

scientific article published on 6 September 2017

Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures

scientific article published in April 2015

Adeno-associated viral vectors for anterograde axonal tracing with fluorescent proteins in nontransgenic and cre driver mice

scientific article

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

scientific article

Alternating sources of perisomatic inhibition during behavior

scientific article published on 01 February 2021

An R-CaMP1.07 reporter mouse for cell-type-specific expression of a sensitive red fluorescent calcium indicator

scientific article

An inducible and reversible mouse genetic rescue system

scientific article

Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation

scientific article published on 10 July 2014

Author Correction: Human neocortical expansion involves glutamatergic neuron diversification

scientific article published in 2022

Autonomous patch-clamp robot for functional characterization of neurons in vivo: development and application to mouse visual cortex

scientific article published on 10 April 2019

Brainwide Genetic Sparse Cell Labeling to Illuminate the Morphology of Neurons and Glia with Cre-Dependent MORF Mice

scientific article published on 05 August 2020

Building Atlases Of The Brain

Ca(2+) signaling in astrocytes from Ip3r2(-/-) mice in brain slices and during startle responses in vivo.

scientific article

Cell-nonautonomous local and systemic responses to cell arrest enable long-bone catch-up growth in developing mice.

scientific article published on 26 June 2018

Cellular anatomy of the mouse primary motor cortex

scientific article

Cerebellar Purkinje cell activity drives motor learning

scientific article

Classification of electrophysiological and morphological neuron types in the mouse visual cortex

scientific article published on 17 June 2019

Common Cell type Nomenclature for the mammalian brain: A systematic, extensible convention ⬇️

journal article from 'arXiv:2006.05406 [q-bio]' published in 2020

Common cell type nomenclature for the mammalian brain

scientific article published on 29 December 2020

Comparative cellular analysis of motor cortex in human, marmoset and mouse

scientific article published on 06 October 2021

Conditional calcineurin knockout mice exhibit multiple abnormal behaviors related to schizophrenia

scientific article

Connectional architecture of a mouse hypothalamic circuit node controlling social behavior

article by Liching Lo et al published 21 March 2019 in Proceedings of the National Academy of Sciences of the United States of America

Conserved cell types with divergent features in human versus mouse cortex

scientific article published in 2019 in Nature

Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity

scientific article

Cross-modal coherent registration of whole mouse brains

scientific article published in 2021

Differential connectivity and response dynamics of excitatory and inhibitory neurons in visual cortex.

scientific article published on 17 July 2011

Differential control of learning and anxiety along the dorsoventral axis of the dentate gyrus

scientific article

Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis

scientific article published on 01 May 2020

Distinct descending motor cortex pathways and their roles in movement

scientific article published in Nature

Diverse Central Projection Patterns of Retinal Ganglion Cells

scientific article published on February 2017

Electron Microscopy at Scale.

scientific article published on July 2015

Enhancer viruses for combinatorial cell-subclass-specific labeling

scientific article published on 30 March 2021

Enteroendocrine cells switch hormone expression along the crypt-to-villus BMP signalling gradient

scientific article published on 23 July 2018

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

scientific article published in April 2020

Experience-dependent remodeling of basket cell networks in the dentate gyrus

scientific article published on October 2014

Flexible Learning-Free Segmentation and Reconstruction of Neural Volumes

scientific article published in Scientific Reports

Fundamental bounds on the fidelity of sensory cortical coding

scientific article published on 18 March 2020

Generalized leaky integrate-and-fire models classify multiple neuron types

scientific article published on 19 February 2018

Generation of a whole-brain atlas for the cholinergic system and mesoscopic projectome analysis of basal forebrain cholinergic neurons.

scientific article published on 19 December 2017

Genetic Identification of Vagal Sensory Neurons That Control Feeding

scientific article published on 01 November 2019

Genetic approaches to neural circuits in the mouse.

scientific article

Genetically Targeted All-Optical Electrophysiology with a Transgenic Cre-Dependent Optopatch Mouse

scientific article published on October 2016

Hierarchical organization of cortical and thalamic connectivity

scientific article published on 30 October 2019

High-resolution data-driven model of the mouse connectome.

scientific article published in December 2018

Human neocortical expansion involves glutamatergic neuron diversification

scientific article

Identification of preoptic sleep neurons using retrograde labelling and gene profiling

scientific article

In Vivo Submillisecond Two-Photon Optogenetics with Temporally Focused Patterned Light

scientific article published on 04 March 2019

Inferring cortical function in the mouse visual system through large-scale systems neuroscience

scientific article

Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells ⬇️

scientific article published on 01 November 2020

Integration of autopatching with automated pipette and cell detection in vitro

scientific article

Interactive exemplar-based segmentation toolkit for biomedical image analysis

Intersectional mapping of multi-transmitter neurons and other cell types in the brain

scientific article published in 2022

Intersectional monosynaptic tracing for dissecting subtype-specific organization of GABAergic interneuron inputs

scientific article published on 28 January 2019

Isoform cell-type specificity in the mouse primary motor cortex

scientific article published on 06 October 2021

Kilohertz two-photon brain imaging in awake mice

scientific article published on 28 October 2019

Large-scale cellular-resolution gene profiling in human neocortex reveals species-specific molecular signatures

scientific article published in April 2012

Large-scale, saturating insertional mutagenesis of the mouse genome

scientific article

Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex.

scientific article published on 23 January 2017

Lineage Tracing Using Cux2-Cre and Cux2-CreERT2 Mice

scientific article published on May 2015

Local processing in neurites of VGluT3-expressing amacrine cells differentially organizes visual information

scientific article

Long-Term Optical Access to an Estimated One Million Neurons in the Live Mouse Cortex

scientific article published in December 2016

Medial habenula output circuit mediated by α5 nicotinic receptor-expressing GABAergic neurons in the interpeduncular nucleus

scientific article

Mesoscale connectomics

scientific article published on 24 March 2018

Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex

scientific article published on 12 October 2023

Morphological diversity of single neurons in molecularly defined cell types

scientific article

Mouse transgenic approaches in optogenetics

scientific article

Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior

scientific article published on 01 October 2019

Neocortical Chandelier Cells Developmentally Shape Axonal Arbors through Reorganization but Establish Subcellular Synapse Specificity without Refinement.

scientific article

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas

scientific article

Neuromedin U receptor 2-deficient mice display differential responses in sensory perception, stress, and feeding

scientific article

Neuronal cell-subtype specificity of neural synchronization in mouse primary visual cortex.

scientific article published on 10 June 2019

Neuronal cell-type classification: challenges, opportunities and the path forward

scientific article

Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons.

scientific article published on 5 March 2018

Olfactory cortical neurons read out a relative time code in the olfactory bulb

scientific article published on 19 May 2013

Organization of the connections between claustrum and cortex in the mouse

scientific article

Phenotypic analysis of mice deficient in the type 2 galanin receptor (GALR2).

scientific article

Phenotypic variation of transcriptomic cell types in mouse motor cortex

scientific article published on 12 November 2020

Preparation of Acute Brain Slices Using an Optimized N-Methyl-D-glucamine Protective Recovery Method.

scientific article published on 26 February 2018

Publisher Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types

scientific article published on 04 December 2020

Publisher Correction: Flexible Learning-Free Segmentation and Reconstruction of Neural Volumes

scientific article published in Scientific Reports

RecV recombinase system for in vivo targeted optogenomic modifications of single cells or cell populations

scientific article published on 23 March 2020

Regional, Layer, and Cell-Type-Specific Connectivity of the Mouse Default Mode Network

scientific article published on 01 December 2020

Resolution of High-Frequency Mesoscale Intracortical Maps Using the Genetically Encoded Glutamate Sensor iGluSnFR.

scientific article published on January 2016

Scalable control of mounting and attack by Esr1+ neurons in the ventromedial hypothalamus

scientific article

Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization

Signature morphoelectric properties of diverse GABAergic interneurons in the human neocortex

scientific article published on 12 October 2023

Single-cell transcriptomic evidence for dense intracortical neuropeptide networks

scientific article published on 11 November 2019

Single-nucleus and single-cell transcriptomes compared in matched cortical cell types

scientific article published in PLoS ONE

SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology.

scientific article published on 24 August 2017

Sparse recurrent excitatory connectivity in the microcircuit of the adult mouse and human cortex

scientific article published on 26 September 2018

Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH

scientific article

Specific connections of the interpeduncular subnuclei reveal distinct components of the habenulopeduncular pathway.

scientific article published on 7 April 2017

Subpallial Enhancer Transgenic Lines: a Data and Tool Resource to Study Transcriptional Regulation of GABAergic Cell Fate.

scientific article

Systematic comparison of adeno-associated virus and biotinylated dextran amine reveals equivalent sensitivity between tracers and novel projection targets in the mouse brain

scientific article published on June 2014

Systematic generation of biophysically detailed models for diverse cortical neuron types

scientific article published on 19 February 2018

TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain

scientific article published on 02 August 2019

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas

scientific article published on 30 April 2020

The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas

scientific article published on November 2017

The G protein-coupled receptor repertoires of human and mouse

scientific article

The Mouse Claustrum Is Required for Optimal Behavioral Performance Under High Cognitive Demand

scientific article published on 10 April 2020

The role of kisspeptin-GPR54 signaling in the tonic regulation and surge release of gonadotropin-releasing hormone/luteinizing hormone.

scientific article published in October 2007

Thyrotropin-releasing hormone receptor 1-deficient mice display increased depression and anxiety-like behavior

scientific article published on 31 July 2007

Transcriptomic evidence for dense peptidergic neuromodulation networks in mouse cortex

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance

scientific article

Two-Photon Holographic Stimulation of ReaChR.

scientific article

Validation of optical voltage reporting by the genetically encoded voltage indicator VSFP-Butterfly from cortical layer 2/3 pyramidal neurons in mouse brain slices

scientific article

Vasoactive intestinal polypeptide (VIP)-expressing neurons in the suprachiasmatic nucleus provide sparse GABAergic outputs to local neurons with circadian regulation occurring distal to the opening of postsynaptic GABAA ionotropic receptors

scientific article

Visual Cortex Gains Independence from Peripheral Drive before Eye Opening

scientific article published on 24 September 2019

Visual tuning properties of genetically identified layer 2/3 neuronal types in the primary visual cortex of cre-transgenic mice

scientific article

Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics

scientific article published on 01 May 2019

Volumetric Ca2+ Imaging in the Mouse Brain Using Hybrid Multiplexed Sculpted Light Microscopy

scientific article published on 11 April 2019

What is a cell type and how to define it? ⬇️

scientific article published in July 2022

List of works by Hongkui Zeng

3D Image-Guided Automatic Pipette Positioning for Single Cell Experiments in vivo.

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality

A collection of genetic mouse lines and related tools for inducible and reversible intersectional misexpression

A community-based transcriptomics classification and nomenclature of neocortical cell types

A coupled autoencoder approach for multi-modal analysis of cell types ⬇️

A gut-to-brain signal of fluid osmolarity controls thirst satiation

A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex

A mesoscale connectome of the mouse brain

A multimodal cell census and atlas of the mammalian primary motor cortex

A robot for high yield electrophysiology and morphology of single neurons in vivo

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines

Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures

Adeno-associated viral vectors for anterograde axonal tracing with fluorescent proteins in nontransgenic and cre driver mice

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

Alternating sources of perisomatic inhibition during behavior

An R-CaMP1.07 reporter mouse for cell-type-specific expression of a sensitive red fluorescent calcium indicator

An inducible and reversible mouse genetic rescue system

Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation

Author Correction: Human neocortical expansion involves glutamatergic neuron diversification

Autonomous patch-clamp robot for functional characterization of neurons in vivo: development and application to mouse visual cortex

Brainwide Genetic Sparse Cell Labeling to Illuminate the Morphology of Neurons and Glia with Cre-Dependent MORF Mice

Building Atlases Of The Brain

Ca(2+) signaling in astrocytes from Ip3r2(-/-) mice in brain slices and during startle responses in vivo.

Cell-nonautonomous local and systemic responses to cell arrest enable long-bone catch-up growth in developing mice.

Cellular anatomy of the mouse primary motor cortex

Cerebellar Purkinje cell activity drives motor learning

Classification of electrophysiological and morphological neuron types in the mouse visual cortex

Common Cell type Nomenclature for the mammalian brain: A systematic, extensible convention ⬇️

Common cell type nomenclature for the mammalian brain

Comparative cellular analysis of motor cortex in human, marmoset and mouse

Conditional calcineurin knockout mice exhibit multiple abnormal behaviors related to schizophrenia

Connectional architecture of a mouse hypothalamic circuit node controlling social behavior

Conserved cell types with divergent features in human versus mouse cortex

Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity

Cross-modal coherent registration of whole mouse brains

Differential connectivity and response dynamics of excitatory and inhibitory neurons in visual cortex.

Differential control of learning and anxiety along the dorsoventral axis of the dentate gyrus

Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis

Distinct descending motor cortex pathways and their roles in movement

Diverse Central Projection Patterns of Retinal Ganglion Cells

Electron Microscopy at Scale.

Enhancer viruses for combinatorial cell-subclass-specific labeling

Enteroendocrine cells switch hormone expression along the crypt-to-villus BMP signalling gradient

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

Experience-dependent remodeling of basket cell networks in the dentate gyrus

Flexible Learning-Free Segmentation and Reconstruction of Neural Volumes

Fundamental bounds on the fidelity of sensory cortical coding

Generalized leaky integrate-and-fire models classify multiple neuron types

Generation of a whole-brain atlas for the cholinergic system and mesoscopic projectome analysis of basal forebrain cholinergic neurons.

Genetic Identification of Vagal Sensory Neurons That Control Feeding

Genetic approaches to neural circuits in the mouse.

Genetically Targeted All-Optical Electrophysiology with a Transgenic Cre-Dependent Optopatch Mouse

Hierarchical organization of cortical and thalamic connectivity

High-resolution data-driven model of the mouse connectome.

Human neocortical expansion involves glutamatergic neuron diversification

Identification of preoptic sleep neurons using retrograde labelling and gene profiling

In Vivo Submillisecond Two-Photon Optogenetics with Temporally Focused Patterned Light

Inferring cortical function in the mouse visual system through large-scale systems neuroscience

Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells ⬇️

Integration of autopatching with automated pipette and cell detection in vitro

Interactive exemplar-based segmentation toolkit for biomedical image analysis

Intersectional mapping of multi-transmitter neurons and other cell types in the brain

Intersectional monosynaptic tracing for dissecting subtype-specific organization of GABAergic interneuron inputs

Isoform cell-type specificity in the mouse primary motor cortex

Kilohertz two-photon brain imaging in awake mice

Large-scale cellular-resolution gene profiling in human neocortex reveals species-specific molecular signatures

Large-scale, saturating insertional mutagenesis of the mouse genome

Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex.

Lineage Tracing Using Cux2-Cre and Cux2-CreERT2 Mice

Local processing in neurites of VGluT3-expressing amacrine cells differentially organizes visual information

Long-Term Optical Access to an Estimated One Million Neurons in the Live Mouse Cortex

Medial habenula output circuit mediated by α5 nicotinic receptor-expressing GABAergic neurons in the interpeduncular nucleus

Mesoscale connectomics

Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex

Morphological diversity of single neurons in molecularly defined cell types

Mouse transgenic approaches in optogenetics