List of works by Jakob Bunkenborg

A mass spectrometry–friendly database for cSNP identification

scholarly article by Søren Schandorff et al published June 2007 in Nature Methods

A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation.

scientific article published in May 2004

A proteomic analysis of human hemodialysis fluid.

scientific article

A redox-dependent dimerization switch regulates activity and tolerance for reactive oxygen species of barley seed glutathione peroxidase

scientific article

An Enzymatic Deglycosylation Scheme Enabling Identification of Core FucosylatedN-Glycans and O-Glycosylation Site Mapping of Human Plasma Proteins

scientific article published on 18 July 2007

Centrosomes. Regulated assembly of a supramolecular centrosome scaffold in vitro

scientific article published on May 2015

Comparison of Aqueous Molecular Dynamics with NMR Relaxation and Residual Dipolar Couplings Favors Internal Motion in a Mannose Oligosaccharide

article

Comprehensive Proteomic Analysis of Human Pancreatic Juice

article

Covalent perturbation as a tool for validation of identifications and PTM mapping applied to bovine alpha-crystallin

scientific article published on 8 December 2015

Cutting edge proteomics: benchmarking of six commercial trypsins.

scientific article

DNA damage-induced dynamic changes in abundance and cytosol-nuclear translocation of proteins involved in translational processes, metabolism, and autophagy

scholarly article by Martin V Bennetzen published in September 2018

Data extraction from proteomics raw data: an evaluation of nine tandem MS tools using a large Orbitrap data set.

scientific article

Database-independent, database-dependent, and extended interpretation of peptide mass spectra in VEMS V2.0.

scientific article published in September 2004

Discrimination of Isoleucine and Leucine by Dimethylation-Assisted MS3

scholarly article by Sheila Maibom-Thomsen et al published 17 July 2018 in Analytical Chemistry

Enhanced trypsin on a budget: Stabilization, purification and high-temperature application of inexpensive commercial trypsin for proteomics applications

scientific article published on 27 June 2019

ErbB2-associated changes in the lysosomal proteome.

scientific article published on 14 June 2011

Glycopeptide enrichment using a combination of ZIC-HILIC and cotton wool for exploring the glycoproteome of wheat flour albumins

scientific article published in April 2014

Identification of Thioredoxin Target Disulfides Using Isotope-Coded Affinity Tags

Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics

scientific article

Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens.

scientific article

Identification of thioredoxin disulfide targets using a quantitative proteomics approach based on isotope-coded affinity tags

scientific article

Identification of thioredoxin target disulfides in proteins released from barley aleurone layers

scientific article published on 28 January 2010

Inducing autophagy: a comparative phosphoproteomic study of the cellular response to ammonia and rapamycin

scientific article published on 26 November 2013

Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria

scientific journal article

MSQuant, an open source platform for mass spectrometry-based quantitative proteomics

scientific article published on January 2010

Mammalian Sir2 homolog SIRT3 regulates global mitochondrial lysine acetylation

scientific journal article

Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment.

scientific article published in April 2006

NMR characterization of the DNA binding properties of a novel Hoechst 33258 analogue peptide building block.

scientific article

On the sequence selective bis-intercalation of a homodimeric thiazole orange dye in DNA.

scientific article

On-Bead Chemical Synthesis and Display of Phosphopeptides for Affinity Pull-Down Proteomics

scientific article published on 01 April 2006

Quantitation of Multisite EGF Receptor Phosphorylation Using Mass Spectrometry and a Novel Normalization Approach

Quantitative proteomic assessment of very early cellular signaling events

S100A11 is required for efficient plasma membrane repair and survival of invasive cancer cells

scientific article

SIRT3 deacetylates mitochondrial 3-hydroxy-3-methylglutaryl CoA synthase 2 and regulates ketone body production

scientific article

Screening for N-glycosylated proteins by liquid chromatography mass spectrometry

scientific article (publication date: February 2004)

Serum protein profiling by miniaturized solid-phase extraction and matrix-assisted laser desorption/ionization mass spectrometry

scientific article published in January 2005

Site-specific phosphorylation dynamics of the nuclear proteome during the DNA damage response

scientific article

The Caenorhabditis elegans pericentriolar material components SPD-2 and SPD-5 are monomeric in the cytoplasm before incorporation into the PCM matrix

scientific article

The barley grain thioredoxin system - an update.

scientific article published on 21 May 2013

The human cap-binding complex is functionally connected to the nuclear RNA exosome

scientific article

The minotaur proteome: Avoiding cross-species identifications deriving from bovine serum in cell culture models

article

VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.

scientific article

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