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List of works by Warren Kibbe

A collection of bioconductor methods to visualize gene-list annotations.

scientific article

A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays

scientific article published in January 2008

A framework for annotating human genome in disease context

scientific article

A genome end-game: understanding gene function in the nervous system

scientific article published on May 2004

Annotating nonspecific SAGE tags with microarray data

scientific article published on 28 November 2005

Blood Epigenetic Age may Predict Cancer Incidence and Mortality

scientific article published on 8 February 2016

Cancer Moonshot Data and Technology Team: Enabling a National Learning Healthcare System for Cancer to Unleash the Power of Data

scientific article

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

scientific article

Complexity of Delivering Precision Medicine: Opportunities and Challenges

scientific article published on 01 May 2018

DNA methylation alterations in response to pesticide exposure in vitro

scientific article

Data Harmonization for a Molecularly Driven Health System

article

DictyBase 2013: integrating multiple Dictyostelid species

scientific article

Direct2Experts: a pilot national network to demonstrate interoperability among research-networking platforms

scientific article (publication date: December 2011)

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data

scientific article

Disease Ontology: a backbone for disease semantic integration

scientific article

Gene Ontology annotations and resources

scientific article

Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis

scientific article

Genome-wide study of DNA methylation alterations in response to diazinon exposure in vitro

scientific article

Identification of genes contributing to the obese yellow Avy phenotype: caloric restriction, genotype, diet x genotype interactions

scientific article

Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching

scientific article published on 4 July 2006

Improved prediction of treatment response using microarrays and existing biological knowledge

scientific article published on 01 April 2006

Interpreting microarray results with gene ontology and MeSH.

scientific article published on January 2007

Investigating sources of inaccuracy in wearable optical heart rate sensors

scientific article published on 10 February 2020

Irrational exuberance in clinical proteomics

scientific article published on 01 November 2005

Large-scale mutagenesis of the mouse to understand the genetic bases of nervous system structure and function

scientific article

Linking short tandem repeat polymorphisms with cytosine modifications in human lymphoblastoid cell lines

scientific article

Model-based variance-stabilizing transformation for Illumina microarray data.

scientific article

OligoCalc: an online oligonucleotide properties calculator.

scientific article published on 22 April 2007

Other riffs on cooperation are already showing how well a wiki could work

scientific article

Prediction of genome-wide DNA methylation in repetitive elements

scientific article published on September 2017

Review of current methods, applications, and data management for the bioinformatics analysis of whole exome sequencing

scientific article

Text data extraction for a prospective, research-focused data mart: implementation and validation

scientific article

The Disease and Gene Annotations (DGA): an annotation resource for human disease.

scientific article

The Gene Ontology (GO) database and informatics resource

scientific article (publication date: 2004)

The case for strategic international alliances to harness nutritional genomics for public and personal health

scientific article published in November 2005

Toward a Shared Vision for Cancer Genomic Data

scientific article

Using the bioconductor GeneAnswers package to interpret gene lists.

scientific article

Visual annotation of the gene database

scientific article published in January 2009

Visual presentation as a welcome alternative to textual presentation of gene annotation information.

scientific article published on January 2010

What is mzXML good for?

scientific article

Xanthusbase: adapting wikipedia principles to a model organism database

scientific article (publication date: 2007)

dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa

scientific article

dictyBase, the model organism database for Dictyostelium discoideum

scientific article

dictyBase--a Dictyostelium bioinformatics resource update

scientific article (publication date: 2009)

dictyBase: a new Dictyostelium discoideum genome database

scientific article

lumi: a pipeline for processing Illumina microarray

scientific article (publication date: July 2008)

nuID: a universal naming scheme of oligonucleotides for illumina, affymetrix, and other microarrays

scientific article

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