List of works - Leo Lahti

Binning metagenomic contigs by coverage and composition

scientific article

Fat, fibre and cancer risk in African Americans and rural Africans

scientific article

CDKN2A, NF2, and JUN are dysregulated among other genes by miRNAs in malignant mesothelioma -A miRNA microarray analysis

scientific article

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

scientific article

Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms

scientific article (publication date: 2011)

Metagenomics meets time series analysis: unraveling microbial community dynamics

scientific article published on 22 May 2015

Tipping elements in the human intestinal ecosystem

scientific article

Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data

scientific article

Integrative analysis of microRNA, mRNA and aCGH data reveals asbestos- and histology-related changes in lung cancer

scientific article (publication date: 11 May 2011)

Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database

scientific article published on 12 December 2015

Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines

scientific article published in March 2007

MicroRNA profiling predicts survival in anti-EGFR treated chemorefractory metastatic colorectal cancer patients with wild-type KRAS and BRAF

scientific article published on 23 October 2012

Integrating probe-level expression changes across generations of Affymetrix arrays

scientific article

Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies

scientific article

The adult intestinal core microbiota is determined by analysis depth and health status.

scientific article

Comparative gut microbiota and resistome profiling of intensive care patients receiving selective digestive tract decontamination and healthy subjects

scientific article published on 14 August 2017

A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging

scientific article published on 9 October 2015

A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases.

scientific article

Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays

scientific article published in January 2011

Multi-stability and the origin of microbial community types

scientific article published on 5 May 2017

Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review

scientific article

Unique microRNA profile in Dupuytren's contracture supports deregulation of β-catenin pathway

scientific article published on 30 July 2010

Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river

scientific article published on 26 November 2015

Microbial communities as dynamical systems

scientific article published on 21 July 2018

MicroRNA microarrays on archive bone marrow core biopsies of leukemias--method validation

scientific article

An Open Science Peer Review Oath

scientific article published on 9 January 2015

Stool Microbiota Composition Differs in Patients with Stomach, Colon, and Rectal Neoplasms

scientific article published on 11 July 2018

Targeted resequencing of 9p in acute lymphoblastic leukemia yields concordant results with array CGH and reveals novel genomic alterations.

scientific article

An open science peer review oath

scientific article, version 1

Array comparative genomic hybridization reveals frequent alterations of G1/S checkpoint genes in undifferentiated pleomorphic sarcoma of bone

scientific article published on 19 January 2011

Copy number alterations and neoplasia-specific mutations in MELK, PDCD1LG2, TLN1, and PAX5 at 9p in different neoplasias

scientific article published on 24 March 2014

Signatures of ecological processes in microbial community time series.

scientific article published on 28 June 2018

Global modeling of transcriptional responses in interaction networks

scientific article

Gut microbiota composition is associated with temperament traits in infants

scientific article published on 24 May 2019

Linking Statistical and Ecological Theory: Hubbell's Unified Neutral Theory of Biodiversity as a Hierarchical Dirichlet Process

Alchemy & algorithms: perspectives on the philosophy and history of open science

scholarly article by Leo Lahti et al published 12 May 2017 in Research Ideas and Outcomes

MicroRNA profiling in pediatric acute lymphoblastic leukemia: novel prognostic tools

scientific article published on 22 May 2012

Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment

publication published on 19 February 2021

Bibliographic Data Science and the History of the Book (c. 1500–1800)

scholarly article by Leo Lahti et al published 7 January 2019 in Cataloging & Classification Quarterly

Gut Microbiota Composition in Mid-Pregnancy Is Associated with Gestational Weight Gain but Not Prepregnancy Body Mass Index

article

Associative clustering for exploring dependencies between functional genomics data sets

scientific article

Alchemy & algorithms: perspectives on the philosophy and history of open science

Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

scientific article published on 13 September 2020

Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals

scientific article published on 21 July 2020

Taxonomic signatures of cause-specific mortality risk in human gut microbiome

scientific article published on 11 May 2021

MULTI-TRAIT GENETIC ANALYSIS OF HYPERTENSION REVEALS CLINICALLY INTERPRETABLE SUBTYPES

scientific article published in 2021

Opening academic publishing - Development and application of systematic evaluation criteria

Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

scientific article published in February 2022

Partial restoration of normal intestinal microbiota in morbidly obese women six months after bariatric surgery

scientific article published on 26 November 2020

List of works by Leo Lahti

Binning metagenomic contigs by coverage and composition

Fat, fibre and cancer risk in African Americans and rural Africans

CDKN2A, NF2, and JUN are dysregulated among other genes by miRNAs in malignant mesothelioma -A miRNA microarray analysis

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms

Metagenomics meets time series analysis: unraveling microbial community dynamics

Tipping elements in the human intestinal ecosystem

Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data

Integrative analysis of microRNA, mRNA and aCGH data reveals asbestos- and histology-related changes in lung cancer

Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database

Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines

MicroRNA profiling predicts survival in anti-EGFR treated chemorefractory metastatic colorectal cancer patients with wild-type KRAS and BRAF

Integrating probe-level expression changes across generations of Affymetrix arrays

Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies

The adult intestinal core microbiota is determined by analysis depth and health status.

Comparative gut microbiota and resistome profiling of intensive care patients receiving selective digestive tract decontamination and healthy subjects

A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging

A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases.

Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays

Multi-stability and the origin of microbial community types

Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review

Unique microRNA profile in Dupuytren's contracture supports deregulation of β-catenin pathway

Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river

Microbial communities as dynamical systems

MicroRNA microarrays on archive bone marrow core biopsies of leukemias--method validation

An Open Science Peer Review Oath

Stool Microbiota Composition Differs in Patients with Stomach, Colon, and Rectal Neoplasms

Targeted resequencing of 9p in acute lymphoblastic leukemia yields concordant results with array CGH and reveals novel genomic alterations.

An open science peer review oath

Array comparative genomic hybridization reveals frequent alterations of G1/S checkpoint genes in undifferentiated pleomorphic sarcoma of bone

Copy number alterations and neoplasia-specific mutations in MELK, PDCD1LG2, TLN1, and PAX5 at 9p in different neoplasias

Signatures of ecological processes in microbial community time series.

Global modeling of transcriptional responses in interaction networks

Gut microbiota composition is associated with temperament traits in infants

Linking Statistical and Ecological Theory: Hubbell's Unified Neutral Theory of Biodiversity as a Hierarchical Dirichlet Process

Alchemy & algorithms: perspectives on the philosophy and history of open science

MicroRNA profiling in pediatric acute lymphoblastic leukemia: novel prognostic tools

Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment

Bibliographic Data Science and the History of the Book (c. 1500–1800)

Gut Microbiota Composition in Mid-Pregnancy Is Associated with Gestational Weight Gain but Not Prepregnancy Body Mass Index

Associative clustering for exploring dependencies between functional genomics data sets

Alchemy & algorithms: perspectives on the philosophy and history of open science

Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals

Taxonomic signatures of cause-specific mortality risk in human gut microbiome

MULTI-TRAIT GENETIC ANALYSIS OF HYPERTENSION REVEALS CLINICALLY INTERPRETABLE SUBTYPES

Opening academic publishing - Development and application of systematic evaluation criteria

Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

Partial restoration of normal intestinal microbiota in morbidly obese women six months after bariatric surgery

Taxonomic Signatures of Long-Term Mortality Risk in Human Gut Microbiota