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List of works by Leo Lahti

A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases.

scientific article

A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging

scientific article published on 9 October 2015

A tale of two 'opens': intersections between Free and Open Source Software and Open Scholarship ⬇️

journal article published in 2020

A toolbox of machine learning software to support microbiome analysis

scientific article published in 2023

Alchemy & algorithms: perspectives on the philosophy and history of open science

scholarly article by Leo Lahti et al published 12 May 2017 in Research Ideas and Outcomes

Alchemy & algorithms: perspectives on the philosophy and history of open science

Algorithm 1047: FdeSolver, a Julia Package for Solving Fractional Differential Equations

scientific article published on 22 July 2024

An Open Science Peer Review Oath

scientific article published on 9 January 2015

An open science peer review oath

scientific article, version 1

Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment

publication published on 19 February 2021

Array comparative genomic hybridization reveals frequent alterations of G1/S checkpoint genes in undifferentiated pleomorphic sarcoma of bone

scientific article published on 19 January 2011

Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals

scientific article published on 21 July 2020

Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data

scientific article

Associative clustering for exploring dependencies between functional genomics data sets

scientific article

Bibliographic Data Science and the History of the Book (c. 1500–1800)

scholarly article by Leo Lahti et al published 7 January 2019 in Cataloging & Classification Quarterly

Binning metagenomic contigs by coverage and composition

scientific article

CDKN2A, NF2, and JUN are dysregulated among other genes by miRNAs in malignant mesothelioma -A miRNA microarray analysis

scientific article

Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review

scientific article

Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

scientific article published on 13 September 2020

Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

scientific article published in February 2022

Comparative gut microbiota and resistome profiling of intensive care patients receiving selective digestive tract decontamination and healthy subjects

scientific article published on 14 August 2017

Copy number alterations and neoplasia-specific mutations in MELK, PDCD1LG2, TLN1, and PAX5 at 9p in different neoplasias

scientific article published on 24 March 2014

Diet, Perceived Intestinal Well-Being and Compositions of Fecal Microbiota and Short Chain Fatty Acids in Oat-Using Subjects with Celiac Disease or Gluten Sensitivity

scientific article published on 25 August 2020

Distinct Diet-Microbiota-Metabolism Interactions in Overweight and Obese Pregnant Women: a Metagenomics Approach

scientific article published on 28 March 2022

Eicosanoid Inflammatory Mediators Are Robustly Associated With Blood Pressure in the General Population

scientific article published on 25 September 2020

Exit time as a measure of ecological resilience

scientific article published in 2021

Fat, fibre and cancer risk in African Americans and rural Africans

scientific article

Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines

scientific article

Global modeling of transcriptional responses in interaction networks

scientific article

Gut Microbiota Composition in Mid-Pregnancy Is Associated with Gestational Weight Gain but Not Prepregnancy Body Mass Index

article

Gut Microbiota and Host Gene Mutations in Colorectal Cancer Patients and Controls of Iranian and Finnish Origin

scientific article published on 01 March 2020

Gut microbiota composition is associated with temperament traits in infants

scientific article published on 24 May 2019

Homozygous deletions of cadherin genes in chondrosarcoma—an array comparative genomic hybridization study

article

Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river

scientific article published on 26 November 2015

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

scientific article

Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database

scientific article published on 12 December 2015

Infant fecal microbiota composition and attention to emotional faces

scientific article published on 31 December 2020

Integrating probe-level expression changes across generations of Affymetrix arrays

scientific article

Integrative analysis of microRNA, mRNA and aCGH data reveals asbestos- and histology-related changes in lung cancer

scientific article (publication date: 11 May 2011)

Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies

scientific article

Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms

scientific article (publication date: 2011)

Linking Statistical and Ecological Theory: Hubbell's Unified Neutral Theory of Biodiversity as a Hierarchical Dirichlet Process

MULTI-TRAIT GENETIC ANALYSIS OF HYPERTENSION REVEALS CLINICALLY INTERPRETABLE SUBTYPES

scientific article published in 2021

Maternal prenatal psychological distress and hair cortisol levels associate with infant fecal microbiota composition at 2.5 months of age

scientific article published on 05 June 2020

Metagenomics meets time series analysis: unraveling microbial community dynamics

scientific article published on 22 May 2015

MicroRNA microarrays on archive bone marrow core biopsies of leukemias--method validation

scientific article

MicroRNA profiling in pediatric acute lymphoblastic leukemia: novel prognostic tools.

scientific article published on 22 May 2012

MicroRNA profiling predicts survival in anti-EGFR treated chemorefractory metastatic colorectal cancer patients with wild-type KRAS and BRAF

scientific article published on 23 October 2012

Microbial communities as dynamical systems

scientific article published on 21 July 2018

Microbial communities in a dynamic in vitro model for the human ileum resemble the human ileal microbiota

scientific article published on 01 August 2019

Microbiome Yarns: human biome reproduction, evolution and visual acuity,,.

scientific article published in January 2018

Microbiome data science

scientific article published on 01 October 2019

Microbiome yarns: The Global Phenotype-Genotype Survey. Episode III: importance of microbiota diversification for microbiome function and biome health

article

Multi-stability and the origin of microbial community types

scientific article published on 5 May 2017

Open Data Science

scientific article published in 2018

Opening academic publishing - Development and application of systematic evaluation criteria ⬇️

Partial restoration of normal intestinal microbiota in morbidly obese women six months after bariatric surgery

scientific article published on 26 November 2020

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

scientific article published on 04 April 2022

Prebiotic Xylo-Oligosaccharides Ameliorate High-Fat-Diet-Induced Hepatic Steatosis in Rats

scientific article published on 22 October 2020

Prebiotic Xylo-oligosaccharides Targeting Faecalibacterium prausnitzii Prevent High Fat Diet-induced Hepatic Steatosis in Rats

scientific article

Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays

scientific article published in January 2011

Quantifying the impact of ecological memory on the dynamics of interacting communities

scientific article published on 03 June 2022

Reply to the Letter to the Editor: Gut microbiota composition is associated with temperament traits in infants

scientific article published on 11 July 2019

Retrieval and Analysis of Eurostat Open Data with the eurostat Package

scientific article published in 2017

Signatures of ecological processes in microbial community time series.

scientific article published on 28 June 2018

Skin microbiota diversity among genetically unrelated individuals of Indian origin

scientific article published on 16 March 2022

Stability estimation of autoregulated genes under Michaelis-Menten-type kinetics

scientific article published on 01 June 2018

Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions

scholarly article by Isabel Moreno-Indias et al published 2021 in Frontiers in Microbiology

Stool Microbiota Composition Differs in Patients with Stomach, Colon, and Rectal Neoplasms

scientific article published on 11 July 2018

Targeted resequencing of 9p in acute lymphoblastic leukemia yields concordant results with array CGH and reveals novel genomic alterations.

scientific article

Taxonomic signatures of cause-specific mortality risk in human gut microbiome

scientific article published on 11 May 2021

The adult intestinal core microbiota is determined by analysis depth and health status.

scientific article

Tipping elements in the human intestinal ecosystem

scientific article

Unique microRNA profile in Dupuytren's contracture supports deregulation of β-catenin pathway

scientific article published on 30 July 2010

What are patterns of rise and decline?

scientific article published in November 2023

Xylo-Oligosaccharides in Prevention of Hepatic Steatosis and Adipose Tissue Inflammation: Associating Taxonomic and Metabolomic Patterns in Fecal Microbiomes with Biclustering

scientific article

Xylo-Oligosaccharides in Prevention of Hepatic Steatosis and Adipose Tissue Inflammation: Associating Taxonomic and Metabolomic Patterns in Fecal Microbiomes with Biclustering

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