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List of works by Alicia Byrd

A CRISPR-based approach for proteomic analysis of a single genomic locus

scientific article

A biochemical and biophysical model of G-quadruplex DNA recognition by positive coactivator of transcription 4.

scientific article published on 17 April 2017

A bis-alkylating triplex forming oligonucleotide inhibits intracellular reporter gene expression and prevents triplex unwinding due to helicase activity

scientific article published in May 2003

A parallel quadruplex DNA is bound tightly but unfolded slowly by pif1 helicase

scientific article

A serotonin-induced N-glycan switch regulates platelet aggregation

scientific article published on 30 September 2013

Analysis of Protein-protein Interaction Interface between Yeast Mitochondrial Proteins Rim1 and Pif1 Using Chemical Cross-linking Mass Spectrometry.

scientific article published on 19 November 2015

DEAD-box RNA helicases Dbp2, Ded1 and Mss116 bind to G-quadruplex nucleic acids and destabilize G-quadruplex RNA

scientific article published on 01 April 2019

Dda helicase tightly couples translocation on single-stranded DNA to unwinding of duplex DNA: Dda is an optimally active helicase

scientific article

Direct quantification of the translocation activities of Saccharomyces cerevisiae Pif1 helicase

scientific article published on 01 August 2019

Displacement of a DNA binding protein by Dda helicase

scientific article

Erratum to: Structure and Mechanisms of SF1 DNA Helicases ⬇️

scientific article published on January 1, 2013

Evidence That G-quadruplex DNA Accumulates in the Cytoplasm and Participates in Stress Granule Assembly in Response to Oxidative Stress.

scientific article published on July 2016

Fine tuning of a DNA fork by the RecQ helicase

scientific article

Genome Maintenance by DNA Helicase B

scientific article published on 21 May 2020

Hepatitis C virus NS3 and simian virus 40 T antigen helicases displace streptavidin from 5'-biotinylated oligonucleotides but not from 3'-biotinylated oligonucleotides: evidence for directional bias in translocation on single-stranded DNA.

scientific article

Increasing the Length of the Single-Stranded Overhang Enhances Unwinding of Duplex DNA by Bacteriophage T4 Dda Helicase†

scientific article published on 01 October 2005

Investigation of Translocation, DNA Unwinding, and Protein Displacement by NS3h, the Helicase Domain from the Hepatitis C Virus Helicase

scientific article

N-Naphthoyl-substituted indole thio-barbituric acid analogs inhibit the helicase activity of the hepatitis C virus NS3

scientific article published on 13 December 2018

Novel, fluorescent, SSB protein chimeras with broad utility

scientific article

Pif1 helicase unfolding of G-quadruplex DNA is highly dependent on sequence and reaction conditions

scientific article published in Journal of Biological Chemistry

Pre-steady-state DNA unwinding by bacteriophage T4 Dda helicase reveals a monomeric molecular motor

scientific article

Protein displacement by an assembly of helicase molecules aligned along single-stranded DNA.

scientific article

Protein-protein interaction analysis for functional characterization of helicases.

scientific article published on 15 April 2016

SSB binds to the RecG and PriA helicases in vivo in the absence of DNA.

scientific article published on 13 January 2016

Simultaneous binding to the tracking strand, displaced strand and the duplex of a DNA fork enhances unwinding by Dda helicase

scientific article

Structural basis for DNA unwinding at forked dsDNA by two coordinating Pif1 helicases

scientific article published on 26 November 2019

Structure and Mechanisms of SF1 DNA Helicases

scientific article published on January 2013

Structure and function of Pif1 helicase

scientific article published on 12 September 2017

Superfamily 2 helicases

scientific article published on June 2012

The T4 Phage SF1B Helicase Dda Is Structurally Optimized to Perform DNA Strand Separation

scientific article

Yeast Helicase Pif1 Unwinds RNA:DNA Hybrids with Higher Processivity than DNA:DNA Duplexes.

scientific article published on 5 January 2016

Yeast Pif1 accelerates annealing of complementary DNA strands

scholarly article

Yeast Pif1 helicase exhibits a one-base-pair stepping mechanism for unwinding duplex DNA

scientific article

Yeast transcription co-activator Sub1 and its human homolog PC4 preferentially bind to G-quadruplex DNA.

scientific article published on April 2015

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