List of works - Mikhail Matz

"Fluorescent timer": protein that changes color with time.

scientific article

2b-RAD: a simple and flexible method for genome-wide genotyping

article

A cross-ocean comparison of responses to settlement cues in reef-building corals

scientific article

A green fluorescent protein with photoswitchable emission from the deep sea.

scientific article

A hinge migration mechanism unlocks the evolution of green-to-red photoconversion in GFP-like proteins

scientific article

A likelihood ratio test for species membership based on DNA sequence data

scientific article

A ubiquitous family of putative gap junction molecules

scientific article (publication date: 29 June 2000)

Acid-base catalysis and crystal structures of a least evolved ancestral GFP-like protein undergoing green-to-red photoconversion

scientific article

Adaptive evolution of multicolored fluorescent proteins in reef-building corals

scientific article

Altering electrical connections in the nervous system of the pteropod mollusc Clione limacina by neuronal injections of gap junction mRNA

scientific article (publication date: December 2002)

Amplification of Representative cDNA Samples from Microscopic Amounts of Invertebrate Tissue to Search for New Genes

article

Amplification of cDNA ends based on template-switching effect and step-out PCR.

scientific article published on March 1999

Amplification of cDNA ends using PCR suppression effect and step-out PCR.

scientific article

Amplification of representative cDNA pools from microscopic amounts of animal tissue

article

Amplification of representative cDNA samples from microscopic amounts of invertebrate tissue to search for new genes

article

Applications of ancestral protein reconstruction in understanding protein function: GFP-like proteins

scientific article

Are corals colorful?

scientific article published in March 2006

BOOK REVIEW | Aglow in the Dark: The Revolutionary Science of Biofluorescence

scientific article published in 2006

Bimodal signatures of germline methylation are linked with gene expression plasticity in the coral Acropora millepora

scientific article

CORAL REEFS. Genomic determinants of coral heat tolerance across latitudes

scientific article published in June 2015

CRISPR/Cas9-mediated genome editing in a reef-building coral

article published in the Proceedings of the National Academy of Sciences of the United States of America

Characterization of a group of MITEs with unusual features from two coral genomes

scientific article

Complex selection on a regulator of social cognition: Evidence of balancing selection, regulatory interactions and population differentiation in the prairie vole Avpr1a locus.

scientific article published on 8 December 2017

Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic

scientific article published on 19 August 2019

Construction of a high-resolution genetic linkage map and comparative genome analysis for the reef-building coral Acropora millepora

scientific article

Construction of cDNA libraries from small amounts of total RNA using the suppression PCR effect.

scientific article published on January 1997

Contrasting effects of Symbiodinium identity on coral host transcriptional profiles across latitudes

scientific article published on 13 July 2018

Contributions of host and symbiont pigments to the coloration of reef corals

scientific article published on 22 January 2007

Coral larvae for restoration and research: a large-scale method for rearing Acropora millepora larvae, inducing settlement, and establishing symbiosis.

scientific article

Coral life history differences determine the refugium potential of a remote Caribbean reef

Coral‐bleaching responses to climate change across biological scales

scientific article published in 2022

Deep relationships of Rhizaria revealed by phylogenomics: a farewell to Haeckel's Radiolaria

scientific article

Deep-sequencing method for quantifying background abundances of symbiodinium types: exploring the rare symbiodinium biosphere in reef-building corals

scientific article

Demystifying the RAD fad.

scientific article

Development of gene expression markers of acute heat-light stress in reef-building corals of the genus Porites

scientific article (publication date: 2011)

Diagnostic gene expression biomarkers of coral thermal stress.

scientific article

Different strategies of differential display: areas of application

scientific article published on December 1998

Differential responses of coral larvae to the colour of ambient light guide them to suitable settlement microhabitat

scientific article

Discovery and properties of GFP-like proteins from nonbioluminescent anthozoa

scientific article

Diversity and evolution of coral fluorescent proteins

scientific article

Diversity and evolution of the green fluorescent protein family.

scientific article

Ecological complexity of coral recruitment processes: effects of invertebrate herbivores on coral recruitment and growth depends upon substratum properties and coral species

scientific article

Ecological factors rather than barriers to dispersal shape genetic structure of algal symbionts in horizontally-transmitting corals

Estimating Trait Heritability in Highly Fecund Species

scientific article

Estimating the potential for coral adaptation to global warming across the Indo-West Pacific

scientific article published on 14 April 2020

Evidence for a host role in thermotolerance divergence between populations of the mustard hill coral (Porites astreoides) from different reef environments

scientific article

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

scientific article

Evolution of coral pigments recreated.

scientific article

Evolution of function and color in GFP-like proteins

scientific article

Evolutionary Consequences of DNA Methylation in a Basal Metazoan

scientific article published on 14 May 2016

Evolutionary consequences of DNA methylation in a basal metazoan

Evolutionary origins of germline segregation in Metazoa: evidence for a germ stem cell lineage in the coral Orbicella faveolata (Cnidaria, Anthozoa).

scientific article published in January 2016

Exploring the role of Micronesian islands in the maintenance of coral genetic diversity in the Pacific Ocean.

scientific article

Expression of the carboxypeptidase T gene fromThermoactinomyces vulgarisin stable protoplast type L-forms ofProteus mirabilis

article

Family of the green fluorescent protein: journey to the end of the rainbow

scientific article

Fantastic Beasts and How To Sequence Them: Ecological Genomics for Obscure Model Organisms

scientific article

Fine-scale environmental specialization of reef-building corals might be limiting reef recovery in the Florida Keys

scientific article

Fluorescence lifetime imaging of coral fluorescent proteins

scientific article published in March 2007

Fluorescence of coral larvae predicts their settlement response to crustose coralline algae and reflects stress.

scientific article published on 26 January 2011

Fluorescent proteins and their applications in imaging living cells and tissues

scientific article

Fluorescent proteins from nonbioluminescent Anthozoa species

scientific article (publication date: October 1999)

GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity.

scientific article

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus

scientific article published on 9 May 2015

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus

article

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

article

Gene expression signatures of energetic acclimatisation in the reef building coral Acropora millepora

scientific article

Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides) from different thermal environments

scientific article

Giant deep-sea protist produces bilaterian-like traces

scientific article (publication date: December 2008)

Heritable differences in fitness-related traits among populations of the mustard hill coral, Porites astreoides

scientific article

Higher stress and immunity responses are associated with higher mortality in reef-building coral exposed to a bacterial challenge

article

Inductive Interactions Regulating Body Patterning in Planarian, Revealed by Analysis of Expression of Novel Genescarf

article

Intraspecific differences in molecular stress responses and coral pathobiome contribute to mortality under bacterial challenge in Acropora millepora

scientific article

It's cheap to be colorful. Anthozoans show a slow turnover of GFP-like proteins

scientific article published on 10 April 2007

Microsatellite characterization and marker development from public EST and WGS databases in the reef-building coral Acropora millepora (Cnidaria, Anthozoa, Scleractinia).

scientific article

Molecular Basis and Evolutionary Origins of Color Diversity in Great Star Coral Montastraea cavernosa (Scleractinia: Faviida)

scientific article published on 30 May 2003

Molecular characterization of larval development from fertilization to metamorphosis in a reef-building coral

scientific article published on 4 January 2018

Molecular tools for coral reef restoration: Beyond biomarker discovery

scientific article published on 18 November 2019

Molecule by molecule PCR amplification of complex DNA mixtures for direct sequencing: an approach to in vitro cloning

scientific article published on June 1996

Multi-colored homologs of the green fluorescent protein from hydromedusa Obelia sp.

scientific article published on 26 May 2011

Multi-domain GFP-like proteins from two species of marine hydrozoans

scientific article published on 18 January 2012

NATURAL ANIMAL COLORATION CAN BE DETERMINED BY A NON-FLUORESCENT GFP HOMOLOG

Natural animal coloration can Be determined by a nonfluorescent green fluorescent protein homolog

scientific article published in August 2000

No control genes required: Bayesian analysis of qRT-PCR data

scientific article

Novel fluorescent protein from Discosoma coral and its mutants possesses a unique far-red fluorescence

scientific article published on 01 August 2000

Novel fluorescent proteins: diversity, mutagenesis and applications

Ordered differential display.

scientific article

Ordered differential display: a simple method for systematic comparison of gene expression profiles

scientific article published on June 1997

Population structure and connectivity of the mountainous star coral, Orbicella faveolata, throughout the wider Caribbean region.

scientific article

Potential and limits for rapid genetic adaptation to warming in a Great Barrier Reef coral.

scientific article published on 19 April 2018

Primary structure of carboxypeptidase T: delineation of functionally relevant features in Zn-carboxypeptidase family

scientific article

Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure.

scientific article

Quantifying cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico

scientific article

Quantitative high resolution melting: two methods to determine SNP allele frequencies from pooled samples

scientific article published on 13 June 2015

Rapid adaptive responses to climate change in corals

article

Rapid evolution of coral proteins responsible for interaction with the environment

scientific article

Red fluorescence in coral larvae is associated with a diapause-like state

scientific article published on 24 November 2015

Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution

scientific article

Regulation of average length of complex PCR product

scientific article published on September 1999

Relationship between Acropora millepora juvenile fluorescence and composition of newly established Symbiodinium assemblage.

scientific article published on 15 June 2018

Retracing evolution of red fluorescence in GFP-like proteins from Faviina corals

scientific article

Role of gene body methylation in acclimatization and adaptation in a basal metazoan

scientific article published on 07 December 2018

Sequence-Independent Method forin VitroGeneration of Nested Deletions for Sequencing Large DNA Fragments

scientific article published on 01 April 1998

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

scientific article

Simple cDNA normalization using kamchatka crab duplex-specific nuclease

scientific article

Statistical approaches for DNA barcoding

scientific article published on February 2006

Transcriptome dynamics over a lunar month in a broadcast spawning acroporid coral.

scientific article

Very bright green fluorescent proteins from the Pontellid copepod Pontella mimocerami

scientific article

List of works by Mikhail Matz

"Fluorescent timer": protein that changes color with time.

2b-RAD: a simple and flexible method for genome-wide genotyping

A cross-ocean comparison of responses to settlement cues in reef-building corals

A green fluorescent protein with photoswitchable emission from the deep sea.

A hinge migration mechanism unlocks the evolution of green-to-red photoconversion in GFP-like proteins

A likelihood ratio test for species membership based on DNA sequence data

A ubiquitous family of putative gap junction molecules

Acid-base catalysis and crystal structures of a least evolved ancestral GFP-like protein undergoing green-to-red photoconversion

Adaptive evolution of multicolored fluorescent proteins in reef-building corals

Altering electrical connections in the nervous system of the pteropod mollusc Clione limacina by neuronal injections of gap junction mRNA

Amplification of Representative cDNA Samples from Microscopic Amounts of Invertebrate Tissue to Search for New Genes

Amplification of cDNA ends based on template-switching effect and step-out PCR.

Amplification of cDNA ends using PCR suppression effect and step-out PCR.

Amplification of representative cDNA pools from microscopic amounts of animal tissue

Amplification of representative cDNA samples from microscopic amounts of invertebrate tissue to search for new genes

Applications of ancestral protein reconstruction in understanding protein function: GFP-like proteins

Are corals colorful?

BOOK REVIEW | Aglow in the Dark: The Revolutionary Science of Biofluorescence

Bimodal signatures of germline methylation are linked with gene expression plasticity in the coral Acropora millepora

CORAL REEFS. Genomic determinants of coral heat tolerance across latitudes

CRISPR/Cas9-mediated genome editing in a reef-building coral

Characterization of a group of MITEs with unusual features from two coral genomes

Complex selection on a regulator of social cognition: Evidence of balancing selection, regulatory interactions and population differentiation in the prairie vole Avpr1a locus.

Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic

Construction of a high-resolution genetic linkage map and comparative genome analysis for the reef-building coral Acropora millepora

Construction of cDNA libraries from small amounts of total RNA using the suppression PCR effect.

Contrasting effects of Symbiodinium identity on coral host transcriptional profiles across latitudes

Contributions of host and symbiont pigments to the coloration of reef corals

Coral larvae for restoration and research: a large-scale method for rearing Acropora millepora larvae, inducing settlement, and establishing symbiosis.

Coral life history differences determine the refugium potential of a remote Caribbean reef

Coral‐bleaching responses to climate change across biological scales

Deep relationships of Rhizaria revealed by phylogenomics: a farewell to Haeckel's Radiolaria

Deep-sequencing method for quantifying background abundances of symbiodinium types: exploring the rare symbiodinium biosphere in reef-building corals

Demystifying the RAD fad.

Development of gene expression markers of acute heat-light stress in reef-building corals of the genus Porites

Diagnostic gene expression biomarkers of coral thermal stress.

Different strategies of differential display: areas of application

Differential responses of coral larvae to the colour of ambient light guide them to suitable settlement microhabitat

Discovery and properties of GFP-like proteins from nonbioluminescent anthozoa

Diversity and evolution of coral fluorescent proteins

Diversity and evolution of the green fluorescent protein family.

Ecological complexity of coral recruitment processes: effects of invertebrate herbivores on coral recruitment and growth depends upon substratum properties and coral species

Ecological factors rather than barriers to dispersal shape genetic structure of algal symbionts in horizontally-transmitting corals

Estimating Trait Heritability in Highly Fecund Species

Estimating the potential for coral adaptation to global warming across the Indo-West Pacific

Evidence for a host role in thermotolerance divergence between populations of the mustard hill coral (Porites astreoides) from different reef environments

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

Evolution of coral pigments recreated.

Evolution of function and color in GFP-like proteins

Evolutionary Consequences of DNA Methylation in a Basal Metazoan

Evolutionary consequences of DNA methylation in a basal metazoan

Evolutionary origins of germline segregation in Metazoa: evidence for a germ stem cell lineage in the coral Orbicella faveolata (Cnidaria, Anthozoa).

Exploring the role of Micronesian islands in the maintenance of coral genetic diversity in the Pacific Ocean.

Expression of the carboxypeptidase T gene fromThermoactinomyces vulgarisin stable protoplast type L-forms ofProteus mirabilis

Family of the green fluorescent protein: journey to the end of the rainbow

Fantastic Beasts and How To Sequence Them: Ecological Genomics for Obscure Model Organisms

Fine-scale environmental specialization of reef-building corals might be limiting reef recovery in the Florida Keys

Fluorescence lifetime imaging of coral fluorescent proteins

Fluorescence of coral larvae predicts their settlement response to crustose coralline algae and reflects stress.

Fluorescent proteins and their applications in imaging living cells and tissues

Fluorescent proteins from nonbioluminescent Anthozoa species

GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity.

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

Gene expression signatures of energetic acclimatisation in the reef building coral Acropora millepora

Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides) from different thermal environments

Giant deep-sea protist produces bilaterian-like traces

Heritable differences in fitness-related traits among populations of the mustard hill coral, Porites astreoides

Higher stress and immunity responses are associated with higher mortality in reef-building coral exposed to a bacterial challenge

Inductive Interactions Regulating Body Patterning in Planarian, Revealed by Analysis of Expression of Novel Genescarf

Intraspecific differences in molecular stress responses and coral pathobiome contribute to mortality under bacterial challenge in Acropora millepora

It's cheap to be colorful. Anthozoans show a slow turnover of GFP-like proteins

Microsatellite characterization and marker development from public EST and WGS databases in the reef-building coral Acropora millepora (Cnidaria, Anthozoa, Scleractinia).

Molecular Basis and Evolutionary Origins of Color Diversity in Great Star Coral Montastraea cavernosa (Scleractinia: Faviida)

Molecular characterization of larval development from fertilization to metamorphosis in a reef-building coral

Molecular tools for coral reef restoration: Beyond biomarker discovery

Molecule by molecule PCR amplification of complex DNA mixtures for direct sequencing: an approach to in vitro cloning

Multi-colored homologs of the green fluorescent protein from hydromedusa Obelia sp.