List of works - Muhammad Idrees

A study of best positive predictors for sustained virologic response to interferon alpha plus ribavirin therapy in naive chronic hepatitis C patients

scientific article

An overview of treatment response rates to various anti-viral drugs in Pakistani hepatitis B virus infected patients

scientific article

An overview of triple infection with hepatitis B, C and D viruses

scientific article

Avian influenza A (H9N2): computational molecular analysis and phylogenetic characterization of viral surface proteins isolated between 1997 and 2009 from the human population

scientific article

Change in demographic pattern of dengue virus infection: evidence from 2011 dengue outbreak in Punjab, Pakistan.

scientific article published on 22 August 2013

Change in hepatitis C virus clades: a cross-sectional study of chronic HCV patients in Pakistan from 2000-2010.

scientific article published on 6 January 2011

Characterization of hepatitis C Virus genotype 3a hypervariable region 1 in patients achieved rapid virological response to alpha interferon and ribavirin combination therapy.

scientific article

Computational identification and modeling of crosstalk between phosphorylation, O-β-glycosylation and methylation of FoxO3 and implications for cancer therapeutics

scientific article published on 5 March 2012

Computational identification of interplay between phosphorylation and O-β-glycosylation of human occludin as potential mechanism to impair hepatitis C virus entry

scientific article published on 10 April 2012

Computational prediction and analysis of envelop glycoprotein epitopes of DENV-2 and DENV-3 Pakistani isolates: a first step towards Dengue vaccine development

scientific article

Correlation of biochemical markers and HCV RNA titers with fibrosis stages and grades in chronic HCV-3a patients

scientific article published on July 2014

De Novo modeling of Envelope 2 protein of HCV isolated from Pakistani patient and epitopes prediction for vaccine development

scientific article

Determination of HCV genotypes and viral loads in chronic HCV infected patients of Hazara Pakistan

scientific article

Determination of hepatitis C virus genotypes circulating in different districts of Punjab (Pakistan).

scientific article published in January 2014

Development of an improved genotyping assay for the detection of hepatitis C virus genotypes and subtypes in Pakistan

scientific article published on 18 April 2008

Effects of host and virus related factors on interferon-α+ribavirin and pegylated-interferon+ribavirin treatment outcomes in chronic Hepatitis C patients. ⬇️

scientific article

Emergence of genetically variant Hepatitis C virus population in response to increased antiviral drug pressure, Pakistan

scientific article published on 16 February 2014

Envelope 2 protein phosphorylation sites S75 & 277 of hepatitis C virus genotype 1a and interferon resistance: a sequence alignment approach

scientific article

Establishment of stable Huh-7 cell lines expressing various hepatitis C virus genotype 3a protein: an in-vitro testing system for novel anti-HCV drugs

scientific article

Evaluation of three different hepatitis C virus typing methods for detection of mixed-genotype infections.

scientific article published in June 2011

Evidence-based consensus on the diagnosis, prevention and management of hepatitis C virus disease

scientific article

Expression of Hepatitis C Virus Core and E2 antigenic recombinant proteins and their use for development of diagnostic assays

scientific article published on 18 March 2015

Expression of core antigen of HCV genotype 3a and its evaluation as screening agent for HCV infection in Pakistan.

scientific article

Frequency distribution of hepatitis C virus genotypes in different geographical regions of Pakistan and their possible routes of transmission

scientific article

Generation of infectious HCV pseudo typed particles and its utilization for studying the role of CD81 & SRBI receptors in HCV infection.

scientific article published on 19 February 2014

Genetic history of hepatitis C virus in Pakistan

scientific article published on 13 August 2014

Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

scientific article published on 26 August 2015

Hepatitis B virus in Pakistan: a systematic review of prevalence, risk factors, awareness status and genotypes

scientific article

Hepatitis C treatment: current and future perspectives

scientific article

Hepatitis C virus genotype 3a infection and hepatocellular carcinoma: Pakistan experience

scientific article (publication date: 28 October 2009)

Hepatitis C virus genotype 3a with phylogenetically distinct origin is circulating in Pakistan.

scientific article

Hepatitis C virus genotypes circulating in district Swat of Khyber Pakhtoonkhaw, Pakistan

scientific article

Hepatitis E virus-associated aplastic anaemia: the first case of its kind

scientific article published on 21 March 2012

Hepatitis G virus associated aplastic anemia: a recent case from Pakistan.

scientific article

Hepatitis associated aplastic anemia: a review

scientific article

Hepatitis delta virus genotype-1 alone cocirculates with hepatitis B virus genotypes A and D in Pakistan

scientific article published on March 2014

High baseline interleukine-8 level is an independent risk factor for the achievement of sustained virological response in chronic HCV patients

scientific article published on 28 April 2011

High prevalence of hepatitis C virus infection in the largest province of Pakistan

scientific article published on May 2008

Identification of ionotrophic purinergic receptors in Huh-7 cells and their response towards structural proteins of HCV genotype 3a.

scientific article

Inhibitory effect of kaolin minerals compound against hepatitis C virus in Huh-7 cell lines

scientific article

Introduction and evolution of dengue virus type 2 in Pakistan: a phylogeographic analysis

scientific article

Isolation and characterization of two new hepatitis E virus genotype 1 strains from two mini-outbreaks in Lahore, Pakistan

scientific article

Mixed genotype infections with hepatitis C virus, Pakistan.

scientific article published in August 2011

Molecular epidemiology of Hepatitis C virus genotypes in Khyber Pakhtoonkhaw of Pakistan

scientific article

Mutations in the E2-PePHD region of hepatitis C virus genotype-3a and correlation with response to interferon and ribavirin combination therapy in Pakistani patients

scientific article

Mutations in the NS5A gene are associated with response to interferon+ribavirin combination therapy in patients with chronic hepatitis C virus 3a infection

scientific article published on October 2013

Mycoplasma genitalium: A comparative genomics study of metabolic pathways for the identification of drug and vaccine targets

scientific article published in January 2012

Nucleotide identity and variability among different Pakistani hepatitis C virus isolates

scientific article

Occult hepatitis C virus infection and associated predictive factors: the Pakistan experience.

scientific article published on 22 December 2010

Oncogenic potential of Human Papillomavirus (HPV) and its relation with cervical cancer

scientific article

PCR could be a method of choice for identification of both pulmonary and extra-pulmonary tuberculosis.

scientific article

Pattern and molecular epidemiology of Hepatitis B virus genotypes circulating in Pakistan.

scientific article published on 17 August 2010

Positional effect of phosphorylation sites 266 and 267 in the cytoplasmic domain of the E2 protein of hepatitis C virus 3a genotype: interferon resistance analysis via sequence alignment.

scientific article

Prevalence of HBV infection in suspected population of conflict-affected area of war against terrorism in North Waziristan FATA Pakistan

scientific article published on 30 August 2012

Prevalence of active hepatitis c virus infection in district Mansehra Pakistan

scientific article

Prevalence of hepatitis delta virus infection among hepatitis B virus surface antigen positive patients circulating in the largest province of Pakistan

scientific article

Promiscuous prediction and conservancy analysis of CTL binding epitopes of HCV 3a viral proteome from Punjab Pakistan: an in silico approach

scientific article published on 8 February 2011

Response to combination therapy of HCV 3a infected Pakistani patients and the role of NS5A protein

scientific article

Seroepidemiology of dengue fever in Khyber Pakhtunkhawa, Pakistan.

scientific article

Serotype and genotype analysis of dengue virus by sequencing followed by phylogenetic analysis using samples from three mini outbreaks-2007-2009 in Pakistan

scientific article

Simultaneous amplification of two bacterial genes: more reliable method of Helicobacter pylori detection in microbial rich dental plaque samples.

scientific article published on 30 May 2010

Studies on the role of neutralizing antibodies against envelope genes in resolving HCV pseudo-particles infection

scientific article published on 25 February 2014

The changing epidemiology pattern and frequency distribution of hepatitis C virus in Pakistan

scientific article published on 09 May 2010

The first complete genome sequence of HCV-1a from Pakistan and a phylogenetic analysis with complete genomes from the rest of the world

scientific article published on 27 June 2013

The genotype CC of IL-28B SNP rs12979860 is significantly associated with a sustained virological response in chronic HCV-infected Pakistani patients.

scientific article published on May 2015

The prevalence of HBV infection in the cohort of IDPs of war against terrorism in Malakand Division of Northern Pakistan

scientific article

True prevalence of twin HDV-HBV infection in Pakistan: a molecular approach

scientific article

List of works by Muhammad Idrees

A study of best positive predictors for sustained virologic response to interferon alpha plus ribavirin therapy in naive chronic hepatitis C patients

An overview of treatment response rates to various anti-viral drugs in Pakistani hepatitis B virus infected patients

An overview of triple infection with hepatitis B, C and D viruses

Avian influenza A (H9N2): computational molecular analysis and phylogenetic characterization of viral surface proteins isolated between 1997 and 2009 from the human population

Change in demographic pattern of dengue virus infection: evidence from 2011 dengue outbreak in Punjab, Pakistan.

Change in hepatitis C virus clades: a cross-sectional study of chronic HCV patients in Pakistan from 2000-2010.

Characterization of hepatitis C Virus genotype 3a hypervariable region 1 in patients achieved rapid virological response to alpha interferon and ribavirin combination therapy.

Computational identification and modeling of crosstalk between phosphorylation, O-β-glycosylation and methylation of FoxO3 and implications for cancer therapeutics

Computational identification of interplay between phosphorylation and O-β-glycosylation of human occludin as potential mechanism to impair hepatitis C virus entry

Computational prediction and analysis of envelop glycoprotein epitopes of DENV-2 and DENV-3 Pakistani isolates: a first step towards Dengue vaccine development

Correlation of biochemical markers and HCV RNA titers with fibrosis stages and grades in chronic HCV-3a patients

De Novo modeling of Envelope 2 protein of HCV isolated from Pakistani patient and epitopes prediction for vaccine development

Determination of HCV genotypes and viral loads in chronic HCV infected patients of Hazara Pakistan

Determination of hepatitis C virus genotypes circulating in different districts of Punjab (Pakistan).

Development of an improved genotyping assay for the detection of hepatitis C virus genotypes and subtypes in Pakistan

Effects of host and virus related factors on interferon-α+ribavirin and pegylated-interferon+ribavirin treatment outcomes in chronic Hepatitis C patients. ⬇️

Emergence of genetically variant Hepatitis C virus population in response to increased antiviral drug pressure, Pakistan

Envelope 2 protein phosphorylation sites S75 & 277 of hepatitis C virus genotype 1a and interferon resistance: a sequence alignment approach

Establishment of stable Huh-7 cell lines expressing various hepatitis C virus genotype 3a protein: an in-vitro testing system for novel anti-HCV drugs

Evaluation of three different hepatitis C virus typing methods for detection of mixed-genotype infections.

Evidence-based consensus on the diagnosis, prevention and management of hepatitis C virus disease

Expression of Hepatitis C Virus Core and E2 antigenic recombinant proteins and their use for development of diagnostic assays

Expression of core antigen of HCV genotype 3a and its evaluation as screening agent for HCV infection in Pakistan.

Frequency distribution of hepatitis C virus genotypes in different geographical regions of Pakistan and their possible routes of transmission

Generation of infectious HCV pseudo typed particles and its utilization for studying the role of CD81 & SRBI receptors in HCV infection.

Genetic history of hepatitis C virus in Pakistan

Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Hepatitis B virus in Pakistan: a systematic review of prevalence, risk factors, awareness status and genotypes

Hepatitis C treatment: current and future perspectives

Hepatitis C virus genotype 3a infection and hepatocellular carcinoma: Pakistan experience

Hepatitis C virus genotype 3a with phylogenetically distinct origin is circulating in Pakistan.

Hepatitis C virus genotypes circulating in district Swat of Khyber Pakhtoonkhaw, Pakistan

Hepatitis E virus-associated aplastic anaemia: the first case of its kind

Hepatitis G virus associated aplastic anemia: a recent case from Pakistan.

Hepatitis associated aplastic anemia: a review

Hepatitis delta virus genotype-1 alone cocirculates with hepatitis B virus genotypes A and D in Pakistan

High baseline interleukine-8 level is an independent risk factor for the achievement of sustained virological response in chronic HCV patients

High prevalence of hepatitis C virus infection in the largest province of Pakistan

Identification of ionotrophic purinergic receptors in Huh-7 cells and their response towards structural proteins of HCV genotype 3a.

Inhibitory effect of kaolin minerals compound against hepatitis C virus in Huh-7 cell lines

Introduction and evolution of dengue virus type 2 in Pakistan: a phylogeographic analysis

Isolation and characterization of two new hepatitis E virus genotype 1 strains from two mini-outbreaks in Lahore, Pakistan

Mixed genotype infections with hepatitis C virus, Pakistan.

Molecular epidemiology of Hepatitis C virus genotypes in Khyber Pakhtoonkhaw of Pakistan

Mutations in the E2-PePHD region of hepatitis C virus genotype-3a and correlation with response to interferon and ribavirin combination therapy in Pakistani patients

Mutations in the NS5A gene are associated with response to interferon+ribavirin combination therapy in patients with chronic hepatitis C virus 3a infection

Mycoplasma genitalium: A comparative genomics study of metabolic pathways for the identification of drug and vaccine targets

Nucleotide identity and variability among different Pakistani hepatitis C virus isolates

Occult hepatitis C virus infection and associated predictive factors: the Pakistan experience.

Oncogenic potential of Human Papillomavirus (HPV) and its relation with cervical cancer

PCR could be a method of choice for identification of both pulmonary and extra-pulmonary tuberculosis.

Pattern and molecular epidemiology of Hepatitis B virus genotypes circulating in Pakistan.

Positional effect of phosphorylation sites 266 and 267 in the cytoplasmic domain of the E2 protein of hepatitis C virus 3a genotype: interferon resistance analysis via sequence alignment.

Prevalence of HBV infection in suspected population of conflict-affected area of war against terrorism in North Waziristan FATA Pakistan

Prevalence of active hepatitis c virus infection in district Mansehra Pakistan

Prevalence of hepatitis delta virus infection among hepatitis B virus surface antigen positive patients circulating in the largest province of Pakistan

Promiscuous prediction and conservancy analysis of CTL binding epitopes of HCV 3a viral proteome from Punjab Pakistan: an in silico approach

Response to combination therapy of HCV 3a infected Pakistani patients and the role of NS5A protein

Seroepidemiology of dengue fever in Khyber Pakhtunkhawa, Pakistan.

Serotype and genotype analysis of dengue virus by sequencing followed by phylogenetic analysis using samples from three mini outbreaks-2007-2009 in Pakistan

Simultaneous amplification of two bacterial genes: more reliable method of Helicobacter pylori detection in microbial rich dental plaque samples.

Studies on the role of neutralizing antibodies against envelope genes in resolving HCV pseudo-particles infection

The changing epidemiology pattern and frequency distribution of hepatitis C virus in Pakistan

The first complete genome sequence of HCV-1a from Pakistan and a phylogenetic analysis with complete genomes from the rest of the world

The genotype CC of IL-28B SNP rs12979860 is significantly associated with a sustained virological response in chronic HCV-infected Pakistani patients.

The prevalence of HBV infection in the cohort of IDPs of war against terrorism in Malakand Division of Northern Pakistan

True prevalence of twin HDV-HBV infection in Pakistan: a molecular approach