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List of works by Stephen Cummings

A metagenomic approach to characterize temperate bacteriophage populations from Cystic Fibrosis and non-Cystic Fibrosis bronchiectasis patients

scientific article

A novel culture medium for isolation of rapidly-growing mycobacteria from the sputum of patients with cystic fibrosis

scientific article published on 20 May 2015

Analysis of the microbial community and geochemistry of a sediment core from Great Slave Lake, Canada.

scientific article

Assessment of sample handling practices on microbial activity in sputum samples from patients with cystic fibrosis

scientific article

Bacterial and fungal viability in the preterm gut: NEC and sepsis.

scientific article published on 20 February 2013

Cesarean or Vaginal Birth Does Not Impact the Longitudinal Development of the Gut Microbiome in a Cohort of Exclusively Preterm Infants

scientific article published on 6 June 2017

Combined solvent and water activity stresses on turgor regulation and membrane adaptation in Oceanimonas baumannii ATCC 700832.

scientific article published in January 2003

Comparison of four chromogenic culture media for carbapenemase-producing Enterobacteriaceae.

scientific article published on 3 July 2012

Cytomegalovirus and other common enteric viruses are not commonly associated with NEC.

scientific article published on 4 July 2015

Determining the influence of environmental and patient specific factors on the polymicrobial communities of the cystic fibrosis airway.

scientific article

Development of a novel kinetic model for the analysis of PAH biodegradation in the presence of lead and cadmium co-contaminants.

scientific article

Development of the preterm gut microbiome in twins at risk of necrotising enterocolitis and sepsis

scientific article published on 30 August 2013

Diversity and activity of free-living nitrogen-fixing bacteria and total bacteria in organic and conventionally managed soils

scientific article (publication date: February 2011)

Effect of crop management and sample year on abundance of soil bacterial communities in organic and conventional cropping systems

scientific article published on 10 April 2015

Evaluation of Various Culture Media for Detection of Rapidly Growing Mycobacteria from Patients with Cystic Fibrosis

scientific article published on 20 April 2016

Evaluation of a new chromogenic medium, chromID OXA-48, for recovery of carbapenemase-producing Enterobacteriaceae from patients at a university hospital in Turkey.

scientific article published on 12 October 2014

Excess Mucin Impairs Subglottic Epithelial Host Defense in Mechanically Ventilated Patients

scientific article published on 9 February 2018

Functional changes in gut microbiota during hematopoietic stem cell transplantation for severe combined immunodeficiency

scientific article published on 06 April 2016

Gut bacteria and necrotizing enterocolitis: cause or effect?

scientific article published on 30 April 2015

Gut microbiome variations during hematopoietic stem cell transplant in severe combined immunodeficiency.

scientific article published on 11 March 2015

Gut microbiota in preterm infants: assessment and relevance to health and disease ⬇️

scientific article published on September 25, 2012

Gut microbiota of Type 1 diabetes patients with good glycaemic control and high physical fitness is similar to people without diabetes: an observational study. ⬇️

scientific article

Impacts of organic and conventional crop management on diversity and activity of free-living nitrogen fixing bacteria and total bacteria are subsidiary to temporal effects

scientific article

Lactoferrin: Antimicrobial activity and therapeutic potential

scientific article published on 15 March 2013

Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls

scientific article

Macroamphiphilic components of thermophilic actinomycetes: identification of lipoteichoic acid in Thermobifida fusca

scientific article

Mechanisms Affecting the Gut of Preterm Infants in Enteral Feeding Trials

scientific article

Metabolomic and proteomic analysis of serum from preterm infants with necrotising entercolitis and late-onset sepsis.

scientific article published on 16 November 2015

Microbiological profiles of sputum and gastric juice aspirates in Cystic Fibrosis patients

scientific article published on June 2016

Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia.

scientific article

Phenotypic variation in Streptomyces sp. DSM 40537, a lipoteichoic acid producing actinomycete

scientific article

Phylogenetic assignment and mechanism of action of a crop growth promoting Rhizobium radiobacter strain used as a biofertiliser on graminaceous crops in Russia.

scientific article

Polymicrobial airway bacterial communities in adult bronchiectasis patients

scientific article

Polymicrobial challenges to Koch's postulates: ecological lessons from the bacterial vaginosis and cystic fibrosis microbiomes

scientific article published on 29 February 2012

Preterm gut microbiota and metabolome following discharge from intensive care

scientific article published on 24 November 2015

Prevalence and molecular characterization of Enterobacteriaceae producing NDM-1 carbapenemase at a military hospital in Pakistan and evaluation of two chromogenic media

scientific article published on 14 December 2012

Prevalence of NDM-1 carbapenemase in patients with diarrhoea in Pakistan and evaluation of two chromogenic culture media

scientific article published on 6 March 2013

Proportionate reduction in uncertainty of late onset infection in pre-term infants by neutrophil CD64 measurement

scientific article published on 7 October 2013

Reclassification of 'Pseudomonas fluorescens subsp. cellulosa' NCIMB 10462 (Ueda et al. 1952) as Cellvibrio japonicus sp. nov. and revival of Cellvibrio vulgaris sp. nov., nom. rev. and Cellvibrio fulvus sp. nov., nom. rev.

scientific article

Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis

scientific article

Routine Use of Probiotics in Preterm Infants: Longitudinal Impact on the Microbiome and Metabolome

scientific article published on 10 February 2016

Stool bacterial load in preterm infants with necrotising enterocolitis

scientific article published on 16 February 2016

Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

scientific article

The application of the herbicide bromoxynil to a model soil-derived bacterial community: impact on degradation and community structure

article

The current and future applications of microorganism in the bioremediation of cyanide contamination

scientific article

The degradation of the herbicide bromoxynil and its impact on bacterial diversity in a top soil

scientific article

The impact of acrylonitrile and bioaugmentation on the biodegradation activity and bacterial community structure of a topsoil

scientific article published on 01 January 2006

The impact of bioaugmentation on metal cyanide degradation and soil bacteria community structure.

scientific article published in June 2006

The impact of zinc and lead concentrations and seasonal variation on bacterial and actinobacterial community structure in a metallophytic grassland soil

scientific article

The nasopharyngeal microbiota: an important window of opportunity.

scientific article published in August 2014

The neonatal bowel microbiome in health and infection

scientific article published in June 2014

The preterm gut microbiota: changes associated with necrotizing enterocolitis and infection

scientific article published on 31 August 2012

Use of faropenem as an indicator of carbapenemase activity in the Enterobacteriaceae.

scientific article published on 10 April 2013

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