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List of works by Matthew Scotch

A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records

scientific article

A qualitative study of state-level zoonotic disease surveillance in new England

scientific article (publication date: March 2011)

A systematic review of spatial decision support systems in public health informatics supporting the identification of high risk areas for zoonotic disease outbreaks

article

An 81 nucleotide deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (Jan-Mar 2020)

scientific article published on 01 May 2020

Analyses of Merging Clinical and Viral Genetic Data for Influenza Surveillance

scientific article

At the intersection of public-health informatics and bioinformatics: using advanced Web technologies for phylogeography

scientific article

Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction

scientific article

Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature

scholarly article by Arjun Magge et al published 2019 in Pacific Symposium on Biocomputing

Biomedical informatics techniques for processing and analyzing web blogs of military service members

scientific article published on 5 October 2010

Coding-Complete Genome Sequence of a Human Respirovirus 1 Strain from a Clinical Sample in Arizona

scientific article published on 11 June 2020

Combining phylogeography and spatial epidemiology to uncover predictors of H5N1 influenza A virus diffusion

scientific article

Comparison of ARIMA and Random Forest time series models for prediction of avian influenza H5N1 outbreaks

scientific article

Comparison of human and animal surveillance data for H5N1 influenza A in Egypt 2006-2011.

scientific article

Conceptualizing a Novel Quasi-Continuous Bayesian Phylogeographic Framework for Spatiotemporal Hypothesis Testing

scientific article published on 23 March 2015

Deep neural networks and distant supervision for geographic location mention extraction.

scientific article published in July 2018

Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques

scientific article (publication date: 2008)

Development of SOVAT: A numerical–spatial decision support system for community health assessment research

scientific article published on 15 December 2005

Diffusion of influenza viruses among migratory birds with a focus on the Southwest United States

scientific article

Enhancing phylogeography by improving geographical information from GenBank

scientific article

Evaluation of SOVAT: an OLAP-GIS decision support system for community health assessment data analysis

scientific article

Evolution of 2014/15 H3N2 Influenza Viruses Circulating in US: Consequences for Vaccine Effectiveness and Possible New Pandemic.

scientific article

Examining the differences in format and characteristics of zoonotic virus surveillance data on state agency websites

scientific article

Extracting geographic locations from the literature for virus phylogeography using supervised and distant supervision methods

scientific article published on 26 July 2017

GeoBoost2: A Natural Language Processing Pipeline for GenBank Metadata Enrichment for Virus Phylogeography

scientific article published on 19 July 2020

GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records

scientific article

HCLS 2.0/3.0: health care and life sciences data mashup using Web 2.0/3.0

scientific article (publication date: October 2008)

Human vs. animal outbreaks of the 2009 swine-origin H1N1 influenza A epidemic

scientific article published on 13 September 2011

Identifying current and emerging resources and tools utilized for detection, prediction, and visualization of viral zoonotic disease clusters: a Delphi study

scientific article published on 28 May 2019

In silico analysis suggests interaction between Ebola virus and the extracellular matrix

scientific article

Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography

scientific article published on 01 January 2019

Knowledge-driven geospatial location resolution for phylogeographic models of virus migration

scientific article

Leveraging Simulation Data to Understand Bias in Predictive Models of Infectious Disease Spread

scientific article published on 25 April 2024

Linkages between animal and human health sentinel data

scientific article

Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research

scientific article published on 01 January 2017

Natural language processing methods for enhancing geographic metadata for phylogeography of zoonotic viruses

scientific article

Pan-Enterovirus Amplicon-Based High-Throughput Sequencing Detects the Complete Capsid of a EVA71 Genotype C1 Variant via Wastewater-Based Epidemiology in Arizona

scientific article published on 11 January 2021

Patterns and Disparities in Human Papillomavirus (HPV) Vaccine Uptake for Young Female Adolescents among US States: NIS-Teen (2008-2016)

scientific article published on 28 April 2020

Phylodynamics of Influenza A/H1N1pdm09 in India Reveals Circulation Patterns and Increased Selection for Clade 6b Residues and Other High Mortality Mutants

scientific article published on 27 August 2019

Phylogeography of influenza A H5N1 clade 2.2.1.1 in Egypt.

scientific article

Phylogeography of swine influenza H3N2 in the United States: translational public health for zoonotic disease surveillance

scientific article published on 6 November 2012

Risk factors for human infection with West Nile Virus in Connecticut: a multi-year analysis

scientific article

Social Media Mining for Toxicovigilance: Automatic Monitoring of Prescription Medication Abuse from Twitter.

scientific article published on 9 January 2016

Spatial and multidimensional visualization of Indonesia's village health statistics

scientific article published on 11 June 2008

State-level zoonotic disease surveillance in the United States

scientific article (publication date: December 2011)

The Effects of Sampling Location and Predictor Point Estimate Certainty on Posterior Support in Bayesian Phylogeographic Generalized Linear Models.

scientific article

The Phylogeography of MERS-CoV in Hospital Outbreak-Associated Cases Compared to Sporadic Cases in Saudi Arabia

scientific article published on 14 May 2020

The Yale cTAKES extensions for document classification: architecture and application

scientific article

The effects of random taxa sampling schemes in Bayesian virus phylogeography

scholarly article by Daniel Magee published in October 2018

Use of statistical analysis in the biomedical informatics literature

scientific article

Using value of information to guide evaluation of decision supports for differential diagnosis: is it time for a new look?

scientific article

Web GIS in practice VI: a demo playlist of geo-mashups for public health neogeographers

scientific article (publication date: 18 July 2008)

ZooPhy: A bioinformatics pipeline for virus phylogeography and surveillance

scientific article published on 30 May 2019

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