List of works by David Eyre

A Hybrid Architecture (CO-CONNECT) to Facilitate Rapid Discovery and Access to Data Across the United Kingdom in Response to the COVID-19 Pandemic: Development Study

scientific article published in 2022

A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance

scientific article (publication date: 2012)

Algorithmic fairness and bias mitigation for clinical machine learning with deep reinforcement learning

scientific article published in 2023

An adversarial training framework for mitigating algorithmic biases in clinical machine learning

scientific article published in 2023

Antibody testing for COVID-19: A report from the National COVID Scientific Advisory Panel

scientific article published on 20 April 2020

Antibody testing for COVID-19: A report from the National COVID Scientific Advisory Panel

Asymptomatic Clostridium difficile colonisation and onward transmission

scientific article (publication date: 2013)

BugMat and FindNeighbour: command line and server applications for investigating bacterial relatedness

scientific article

Characterisation of Clostridium difficile hospital ward-based transmission using extensive epidemiological data and molecular typing ⬇️

scientific article

Clostridium difficile in England: can we stop washing our hands? - Authors' reply. ⬇️

scientific article published in May 2017

Clostridium difficile mixed infection and reinfection

scientific article published on 9 November 2011

Clostridium difficile surveillance: harnessing new technologies to control transmission

scientific article

Clostridium difficile: Investigating Transmission Patterns Between Infected and Colonized Patients Using Whole Genome Sequencing ⬇️

article

Clostridium difficile: Investigating Transmission Patterns Between Symptomatic and Asymptomatic Patients Using Whole Genome Sequencing.

scientific article published on 4 October 2017

Comparison of Control of Clostridium difficile Infection in Six English Hospitals Using Whole-Genome Sequencing ⬇️

scientific article published on 29 May 2017

Comparison of multilocus variable-number tandem-repeat analysis and whole-genome sequencing for investigation of Clostridium difficile transmission ⬇️

scientific article published on 09 October 2013

Contribution to Clostridium Difficile Transmission of Symptomatic Patients With Toxigenic Strains Who Are Fecal Toxin Negative ⬇️

scientific article

Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission. ⬇️

scientific article published on 7 August 2017

Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission

scientific article (publication date: 2013)

Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study

scientific article published on 21 August 2020

Divergent trajectories of antiviral memory after SARS-CoV-2 infection

scientific article published on 10 March 2022

Diverse Sources of C. difficile Infection

scientific article published on 01 January 2014

Diverse sources of C. difficile infection identified on whole-genome sequencing

scientific article published on September 2013

Effects of control interventions on Clostridium difficile infection in England: an observational study ⬇️

scientific article published on 24 January 2017

Epidemiology of Clostridium difficile in infants in Oxfordshire, UK: Risk factors for colonization and carriage, and genetic overlap with regional C. difficile infection strains ⬇️

scientific article published on 16 August 2017

Ethnically diverse urban transmission networks of Neisseria gonorrhoeae without evidence of HIV serosorting

scientific article published on 29 October 2019

Evolutionary history of the Clostridium difficile pathogenicity locus ⬇️

scientific article

Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses

scientific article published in 2022

Genetic Heterogeneity of Australian Candida auris Isolates: Insights From a Nonoutbreak Setting Using Whole-Genome Sequencing

scientific article published on 07 May 2020

Genomic analysis of urogenital and rectal Neisseria meningitidis isolates reveals encapsulated hyperinvasive meningococci and coincident multidrug-resistant gonococci

scientific article

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism-calling pipelines

scientific article published on 01 February 2020

Gonorrhoea treatment failure caused by a strain with combined ceftriaxone and high-level azithromycin resistance, England, February 2018

article

Microevolutionary analysis of Clostridium difficile genomes to investigate transmission

scientific article

Molecular Diagnosis of Orthopedic-Device-Related Infection Directly from Sonication Fluid by Metagenomic Sequencing

scientific article published on 10 May 2017

Patient and strain characteristics associated with Clostridium difficile transmission and adverse outcomes. ⬇️

scientific article published on 12 April 2018

Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data.

scientific article

Predictors of first recurrence of Clostridium difficile infection: implications for initial management ⬇️

scientific article

Probabilistic transmission models incorporating sequencing data for healthcare-associated Clostridioides difficile outperform heuristic rules and identify strain-specific differences in transmission

scientific article published on 14 January 2021

Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices

scientific article published on 27 September 2018

Recombinational switching of the Clostridium difficile S-layer and a novel glycosylation gene cluster revealed by large-scale whole-genome sequencing

scientific article published on 29 November 2012

Regarding "Clostridium difficile ribotype does not predict severe infection".

scientific article published on 18 February 2013

Relationship between bacterial strain type, host biomarkers, and mortality in Clostridium difficile infection ⬇️

scientific article published on 5 March 2013

Reply to Walk et al.

scientific article published on 8 May 2013

Results of a multicentre UK-wide retrospective study evaluating the efficacy of pixantrone in relapsed, refractory diffuse large B cell lymphoma

scientific article published on 9 March 2016

Risk Factors for Clostridium difficile Acquisition in Infants: Importance of Study Design

scientific article published on 26 February 2013

Short-term genome stability of serial Clostridium difficile ribotype 027 isolates in an experimental gut model and recurrent human disease ⬇️

scientific article (publication date: 2013)

Should modern molecular testing be routinely available for the diagnosis of musculoskeletal infection?

scientific article published on 01 October 2020

Streptococcus equi subspecies zooepidemicus meningitis--a case report and review of the literature

scientific article published on 05 September 2010

Transmission of Staphylococcus aureus between health-care workers, the environment, and patients in an intensive care unit: a longitudinal cohort study based on whole-genome sequencing

scientific article

Two Distinct Patterns of Clostridium Difficile Diversity Across Europe Indicates Contrasting Routes of Spread. ⬇️

scientific article published on 6 April 2018

Two cases of Clostridium difficile infection in unrelated oncology patients attributable to a single clone of C. difficile PCR ribotype 126

scientific article published in 2015

WGS to determine the extent of Clostridioides difficile transmission in a high incidence setting in North Wales in 2015

article

WGS to predict antibiotic MICs for Neisseria gonorrhoeae

scientific article published on 10 March 2017

Whole genome sequencing of Neisseria gonorrhoeae reveals transmission clusters involving patients of mixed HIV serostatus

scientific article published on 11 October 2017

Whole-genome sequencing demonstrates that fidaxomicin is superior to vancomycin for preventing reinfection and relapse of infection with Clostridium difficile

scientific article

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

scientific article

Whole-genome sequencing to determine transmission of Neisseria gonorrhoeae: an observational study

scientific article published on 11 July 2016

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