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List of works by Bo Wen

A Comprehensive Investigation toward the Indicative Proteins of Bladder Cancer in Urine: From Surveying Cell Secretomes to Verifying Urine Proteins.

scientific article published on 4 June 2016

A Targeted Metabolomics MRM-MS Study on Identifying Potential Hypertension Biomarkers in Human Plasma and Evaluating Acupuncture Effects

scientific article (publication date: 16 May 2016)

An LC-MS based untargeted metabolomics study identified novel biomarkers for coronary heart disease

scientific article published on 22 September 2016

Appraisal of the Missing Proteins Based on the mRNAs Bound to Ribosomes.

scientific article published on 26 October 2015

Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysis

scientific article published on 09 April 2020

Chromosome-8-coded proteome of Chinese Chromosome Proteome Data set (CCPD) 2.0 with partial immunohistochemical verifications

scientific article

Computational Proteomics: Focus on Deep Learning

scientific article published on 01 November 2020

Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer.

scientific article published on 18 August 2016

Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome

scientific article published on March 2017

Deep learning in proteomics

scientific article published on 16 September 2020

DeepRescore: Leveraging Deep Learning to Improve Peptide Identification in Immunopeptidomics

scientific article published on 30 August 2020

Detection of proteome diversity resulted from alternative splicing is limited by trypsin cleavage specificity.

scientific article published on 8 December 2017

Discrimination of sepsis stage metabolic profiles with an LC/MS-MS-based metabolomics approach

scientific article

Drug Resistance in Colorectal Cancer Cell Lines is Partially Associated with Aneuploidy Status in Light of Profiling Gene Expression

scientific article published on 26 July 2016

Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper

scientific article

Expansion of the ion library for mining SWATH-MS data through fractionation proteomics.

scientific article

Feature Selection Methods for Protein Biomarker Discovery from Proteomics or Multiomics Data

scientific article published on 20 April 2021

Fusion-related host proteins are actively regulated by NA during influenza infection as revealed by quantitative proteomics analysis

scientific article

High-throughput identification of heavy metal binding proteins from the byssus of chinese green mussel (Perna viridis) by combination of transcriptome and proteome sequencing

article

High-throughput identification of novel conotoxins from the Chinese tubular cone snail (Conus betulinus) by multi-transcriptome sequencing

scientific article published on 14 April 2016

IPeak: An open source tool to combine results from multiple MS/MS search engines

scientific article published on 6 May 2015

IQuant: an automated pipeline for quantitative proteomics based upon isobaric tags

scientific article published on 5 September 2014

Identification of Novel Biomarkers for Sepsis Prognosis via Urinary Proteomic Analysis Using iTRAQ Labeling and 2D-LC-MS/MS ⬇️

scientific article published on January 23, 2013

Improvement of peptide identification with considering the abundance of mRNA and peptide

scientific article

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

scientific article published on 01 October 2019

Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma

scientific article published on 01 October 2019

Integrated analyses of DNA methylation and hydroxymethylation reveal tumor suppressive roles of ECM1, ATF5, and EOMES in human hepatocellular carcinoma

scientific article

Integrated metabolomics and metagenomics analysis of plasma and urine identified microbial metabolites associated with coronary heart disease

scientific article published on 2 March 2016

Integrated omics in Drosophila uncover a circadian kinome

scientific article published on 01 June 2020

Lipidomics profiling reveals the role of glycerophospholipid metabolism in psoriasis

scientific article published on October 2017

LncRNAs-directed PTEN enzymatic switch governs epithelial-mesenchymal transition

scientific article published on 10 January 2019

Microscaled proteogenomic methods for precision oncology

scientific article published on 27 January 2020

Omics evidence: single nucleotide variants transmissions on chromosome 20 in liver cancer cell lines.

scientific article published on 5 December 2013

Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community

scientific article

PDV: an integrative proteomics data viewer

scientific article published on 01 April 2019

PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq.

scientific article

PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterations

scientific article published on 04 January 2019

Prediction of Toxin Genes from Chinese Yellow Catfish Based on Transcriptomic and Proteomic Sequencing.

scientific article published on 13 April 2016

Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities

scientific article published on 25 April 2019

Proteogenomic Characterization of Endometrial Carcinoma

scientific article published on 13 February 2020

Proteogenomic analysis reveals alternative splicing and translation as part of the abscisic acid response in Arabidopsis seedlings.

scientific article

Proteogenomic characterization of pancreatic ductal adenocarcinoma

scientific article published on 01 September 2021

Quantitative Analysis of the Human AKR Family Members in Cancer Cell Lines Using the mTRAQ/MRM Approach ⬇️

scientific article published on April 10, 2013

Quantitative proteomics reveals the temperature-dependent proteins encoded by a series of cluster genes in thermoanaerobacter tengcongensis.

scientific article

Rapid evolution of protein diversity by de novo origination in Oryza

scientific article published on 11 March 2019

Role of vimentin in modulating immune cell apoptosis and inflammatory responses in sepsis

article

Systematic analysis of missing proteins provides clues to help define all of the protein-coding genes on human chromosome 1.

scientific article

The OMSSAPercolator: an automated tool to validate OMSSA results.

scientific article

The defensive system of tree frog skin identified by peptidomics and RNA sequencing analysis

scientific article published on 23 October 2018

The gut microbiome in atherosclerotic cardiovascular disease.

scientific article published on 10 October 2017

The microbiota continuum along the female reproductive tract and its relation to uterine-related diseases

scientific article published on 17 October 2017

The serum protein responses to treatment with Xiaoke Pill and Glibenclamide in type 2 diabetes patients

scientific article

Urinary proteomics analysis for sepsis biomarkers with iTRAQ labeling and two-dimensional liquid chromatography–tandem mass spectrometry ⬇️

scientific article published on March 1, 2013

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

scientific article

caAtlas: An immunopeptidome atlas of human cancer

scientific article published on 09 September 2021

metaX: a flexible and comprehensive software for processing metabolomics data

scientific article

pClean: An Algorithm To Preprocess High-Resolution Tandem Mass Spectra for Database Searching

scientific article published on 14 August 2019

sapFinder: an R/Bioconductor package for detection of variant peptides in shotgun proteomics experiments

scientific article published on 22 July 2014

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