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List of works by Ana-Nicoleta Bondar

A new group of eubacterial light-driven retinal-binding proton pumps with an unusual cytoplasmic proton donor.

scientific article published on 7 August 2015

A three-dimensional movie of structural changes in bacteriorhodopsin

scientific article

Anomalous behavior of water inside the SecY translocon

scientific article published on 2 July 2015

Biophysical mechanism of rhomboid proteolysis: Setting a foundation for therapeutics.

scientific article published on 15 September 2016

Bridge: A Graph-Based Algorithm to Analyze Dynamic H-Bond Networks in Membrane Proteins

scientific article published on 11 November 2019

Cationic screening of charged surface groups (carboxylates) affects electron transfer steps in photosystem-II water oxidation and quinone reduction.

scientific article

Channelrhodopsins: a bioinformatics perspective.

scientific article

Charged groups at binding interfaces of the PsbO subunit of photosystem II: A combined bioinformatics and simulation study

scientific article published on 15 March 2017

Coupling of retinal, protein, and water dynamics in squid rhodopsin.

scientific article

Cover Image

scientific article published on 02 September 2020

Crystallographic and Computational Analysis of the Barrel Part of the PsbO Protein of Photosystem II: Carboxylate-Water Clusters as Putative Proton Transfer Relays and Structural Switches

scientific article

Dynamic Carboxylate/Water Networks on the Surface of the PsbO Subunit of Photosystem II.

scientific article published on 3 September 2015

Dynamic Water Hydrogen-Bond Networks at the Interface of a Lipid Membrane Containing Palmitoyl-Oleoyl Phosphatidylglycerol.

scientific article published on 9 March 2018

Dynamic water bridging and proton transfer at a surface carboxylate cluster of photosystem II

scientific article published on 12 November 2019

Dynamics of Long-Distance Hydrogen-Bond Networks in Photosystem II.

scientific article published on 28 March 2018

Dynamics of SecY translocons with translocation-defective mutations

scientific article

Dynamics of bovine opsin bound to G-protein fragments.

scientific article published on 17 August 2014

Dynamics of the Plasma Membrane Proton Pump.

scientific article published on 2 October 2014

Dynamics of the internal water molecules in squid rhodopsin.

scientific article published on April 2009

Electrostatic interactions and hydrogen bond dynamics in chloride pumping by halorhodopsin

scientific article

Excitation energies of a water-bridged twisted retinal structure in the bacteriorhodopsin proton pump: a theoretical investigation

scientific article published in August 2013

Exploring cavity dynamics in biomolecular systems.

scientific article

Extended protein/water H-bond networks in photosynthetic water oxidation

scientific article

Festschrift in the honor of Stephen H. White's 70th Birthday

scientific article published on January 2011

Hydrogen bond dynamics in membrane protein function

scientific article

Introduction: Biomembrane Structure, Dynamics, and Reactions

scientific article published on 01 May 2019

Journal of Membrane Biology: Biophysics.

scientific article published on 20 April 2016

Key role of active-site water molecules in bacteriorhodopsin proton-transfer reactions

scientific article published in November 2008

Key role of electrostatic interactions in bacteriorhodopsin proton transfer

scientific article published in November 2004

Kinetics of proton release and uptake by channelrhodopsin-2.

scientific article published on 6 April 2012

Lipid Membranes and Reactions at Lipid Interfaces: Theory, Experiments, and Applications

scientific article published on 29 June 2018

Long-distance proton transfer with a break in the bacteriorhodopsin active site.

scientific article published on May 2009

Mechanism by which Untwisting of Retinal Leads to Productive Bacteriorhodopsin Photocycle States

scientific article published on 07 September 2014

Mechanism of a molecular valve in the halorhodopsin chloride pump

scientific article

Mechanism of conformational coupling in SecA: Key role of hydrogen-bonding networks and water interactions.

scientific article published on 19 November 2015

Mechanism of primary proton transfer in bacteriorhodopsin

scientific article published in July 2004

Mechanisms by Which Lipids Influence Conformational Dynamics of the GlpG Intramembrane Protease

scientific article published on 06 May 2019

Membrane Protein Structure, Function, and Dynamics: a Perspective from Experiments and Theory.

scientific article

Molecular details of the unique mechanism of chloride transport by a cyanobacterial rhodopsin.

scientific article

Phosphatidylglyerol Lipid Binding at the Active Site of an Intramembrane Protease

scientific article published on 18 November 2020

Potential energy function for a photo-switchable lipid molecule

scientific article published on 04 August 2020

Protonation-state-Coupled Conformational Dynamics in Reaction Mechanisms of Channel and Pump Rhodopsins

scientific article published on 6 May 2017

Reactions at Biomembrane Interfaces

scientific article published on 25 April 2019

Revised force-field parameters for chlorophyll-a, pheophytin-a and plastoquinone-9

scientific article published on 10 March 2015

Role of Arg82 in the early steps of the bacteriorhodopsin proton-pumping cycle.

scientific article

Ser/Thr motifs in transmembrane proteins: conservation patterns and effects on local protein structure and dynamics

scientific article

Structural and energetic determinants of primary proton transfer in bacteriorhodopsin.

scientific article published on 4 April 2006

Structural basis of adenylyl cyclase 9 activation

scientific article published on 24 February 2022

Suppression of the back proton-transfer from Asp85 to the retinal Schiff base in bacteriorhodopsin: A theoretical analysis of structural elements

scientific article published on 20 October 2006

The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure

scientific article

Tuning of Retinal Twisting in Bacteriorhodopsin Controls the Directionality of the Early Photocycle Steps

scientific article published on 01 August 2005

Using Graphs of Dynamic Hydrogen-Bond Networks To Dissect Conformational Coupling in a Protein Motor

scientific article published on 30 April 2019

Water pathways in the bacteriorhodopsin proton pump

scientific article published on 28 November 2010

pH-Dependent Protonation of Surface Carboxylate Groups in PsbO Enables Local Buffering and Triggers Structural Changes

scientific article published on 12 January 2020

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