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List of works by Tie Koide

A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability

scientific article published on 16 June 2009

BayGO: Bayesian analysis of ontology term enrichment in microarray data

scientific article

Cold Regulation of Genes Encoding Ion Transport Systems in the Oligotrophic Bacterium Caulobacter crescentus

scientific article published on 25 August 2021

DNA microarray-based genome comparison of a pathogenic and a nonpathogenic strain of Xylella fastidiosa delineates genes important for bacterial virulence

scientific article

Development of New Modular Genetic Tools for Engineering the Halophilic Archaeon Halobacterium salinarum

scientific article published on 10 June 2015

Global gene expression analysis during germination in the chytridiomycete Blastocladiella emersonii.

scientific article published on 19 December 2008

Global gene expression analysis of the heat shock response in the phytopathogen Xylella fastidiosa

scientific article published on August 2006

Global gene expression under nitrogen starvation in Xylella fastidiosa: contribution of the σ54 regulon

scientific article

Gsk3β and Tomm20 are substrates of the SCFFbxo7/PARK15 ubiquitin ligase associated with Parkinson's disease.

scientific article published on 08 August 2016

HTself: self-self based statistical test for low replication microarray studies

scientific article published on January 2005

Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage

scientific article published on 25 July 2008

Insertional transposon mutagenesis in the Xylella fastidiosa Citrus Variegated Chlorosis strain with transposome

scientific article

Integration and visualization of systems biology data in context of the genome

scientific article

Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea

scientific article published on 19 September 2018

Iron Deficiency Generates Oxidative Stress and Activation of the SOS Response in

scientific article published on 28 August 2018

Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis

scientific article

OxyR and the hydrogen peroxide stress response in Caulobacter crescentus

scientific article published on 14 March 2019

Prevalence of transcription promoters within archaeal operons and coding sequences.

scientific article published on 16 June 2009

Role of σ54 in the regulation of genes involved in type I and type IV pili biogenesis in Xylella fastidiosa

article

Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea

scientific article published on January 2015

Site-directed gene disruption in Xylella fastidiosa

scientific article published in April 2002

Site-directed gene disruption inXylella fastidiosa

article

SpotWhatR: a user-friendly microarray data analysis system

scientific article

The F-box protein FBXO25 promotes the proteasome-dependent degradation of ELK-1 protein

scientific article published on 12 August 2013

The MarR family regulator OsbR controls oxidative stress response, anaerobic nitrate respiration, and biofilm formation in Chromobacterium violaceum

scientific article published on 04 November 2021

The Primary Antisense Transcriptome of Halobacterium salinarum NRC-1.

scientific article

The role of predictive modelling in rationally re-engineering biological systems

scientific article (publication date: April 2009)

The single extracytoplasmic-function sigma factor of Xylella fastidiosa is involved in the heat shock response and presents an unusual regulatory mechanism.

scientific article published on 10 November 2006

Transcription start site associated RNAs (TSSaRNAs) are ubiquitous in all domains of life

scientific article published in 2014

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