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List of works by Eivind Valen

3-methylcholanthrene induces differential recruitment of aryl hydrocarbon receptor to human promoters

A code for transcription initiation in mammalian genomes

scientific article

A promoter-level mammalian expression atlas

scientific article

Accurate analysis of genuine CRISPR editing events with ampliCan

scientific article published on 08 March 2019

An atlas of active enhancers across human cell types and tissues

scientific article

Asap: a framework for over-representation statistics for transcription factor binding sites

scientific article published in 2008

Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes

article

CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering

scientific article

CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing

scientific article published on 01 July 2019

CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing

scientific article

Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation

scientific article published on 15 January 2020

Dioxin increases the interaction between aryl hydrocarbon receptor and estrogen receptor alpha at human promoters

scientific article

Discovery of regulatory elements is improved by a discriminatory approach

scientific article

Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus

scientific article published on 30 April 2015

Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs

scientific article

ErbB2 upregulates the Na+,HCO3(-)-cotransporter NBCn1/SLC4A7 in human breast cancer cells via Akt, ERK, Src, and Kruppel-like factor 4.

scientific article published on 2 October 2013

Gene expression analysis of the emergence of epileptiform activity after focal injection of kainic acid into mouse hippocampus

scientific article published on October 2010

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

scientific article

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

scientific article (publication date: March 2014)

Genomic and chromatin signals underlying transcription start-site selection

scientific article published on September 15, 2011

Identifying (non-)coding RNAs and small peptides: challenges and opportunities

scientific article

Internal guide RNA interactions interfere with Cas9-mediated cleavage.

scientific article published on 10 June 2016

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

scientific article (publication date: 2010)

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

scientific article

Nuclear stability and transcriptional directionality separate functionally distinct RNA species

scientific article

ORFik: a comprehensive R toolkit for the analysis of translation

scientific article published on 19 June 2021

PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters

scientific article

Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.

scientific article

Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data

scientific article

REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes

scientific article published on 31 August 2017

Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs

scientific article published on 22 May 2013

Ribosome signatures aid bacterial translation initiation site identification

scientific article published on 30 August 2017

Systematic clustering of transcription start site landscapes

scientific article

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

scientific article published on 22 November 2011

The genome landscape of ERalpha- and ERbeta-binding DNA regions

scholarly article

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

Toddler: an embryonic signal that promotes cell movement via Apelin receptors

scientific article

tailfindr: alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing

scientific article published on 02 July 2019

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