List of works - Jeffrey M. Trimarchi

A primer on gene expression and microarrays for machine learning researchers.

scientific article published in August 2004

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies

scientific article published in July 2006

ALS-associated genes display CNS expression in the developing zebrafish

scientific article published on 27 August 2018

Analysis of gene expression in wild-type and Notch1 mutant retinal cells by single cell profiling.

scientific article published on 02 September 2013

Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data.

scientific article

Coexpression of Normally Incompatible Developmental Pathways in Retinoblastoma Genesis ⬇️

scientific article (publication date: 16 August 2011)

Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates.

scientific article

Complementary feature selection from alternative splicing events and gene expression for phenotype prediction.

scientific article

Development and diversification of retinal amacrine interneurons at single cell resolution

scholarly article

Disentangling neural cell diversity using single-cell transcriptomics

scientific article

E2F-6, a member of the E2F family that can behave as a transcriptional repressor ⬇️

scientific article published on March 17, 1998

Expression Profiling of Developing Zebrafish Retinal Cells.

scientific article published on 16 March 2016

Identification of genes expressed preferentially in the developing peripheral margin of the optic cup.

scientific article published on September 2009

Identification of molecular markers of bipolar cells in the murine retina

scientific article published on April 2008

Individual retinal progenitor cells display extensive heterogeneity of gene expression

scientific article

Loss of gq/11 genes does not abolish melanopsin phototransduction

scientific article

Making of a retinal cell: insights into retinal cell-fate determination.

scientific article published on January 2014

Molecular heterogeneity of developing retinal ganglion and amacrine cells revealed through single cell gene expression profiling

scientific article published in June 2007

Onecut1 and Onecut2 play critical roles in the development of the mouse retina

scientific article

Plasma-seq: a novel strategy for metastatic prostate cancer analysis

scientific article published on 29 April 2013

Polo-Like Kinase 3 Appears Dispensable for Normal Retinal Development Despite Robust Embryonic Expression

scientific article

Proofreading-defective DNA polymerase II increases adaptive mutation in Escherichia coli.

scientific article

Sibling rivalry in the E2F family

scientific article (publication date: 2002)

Single cell transcriptome profiling of developing chick retinal cells

scientific article published on 16 May 2017

Single-cell RNA-Seq of Defined Subsets of Retinal Ganglion Cells

scientific article

Single-cell profiling of developing and mature retinal neurons.

scientific article

Temporal requirement of the alternative-splicing factor Sfrs1 for the survival of retinal neurons.

scientific article published on 5 November 2008

The E2F6 transcription factor is a component of the mammalian Bmi1-containing polycomb complex

scientific article

The Trim family of genes and the retina: Expression and functional characterization

scientific article published in PLoS ONE

The transcriptome of retinal Müller glial cells

scientific article published on July 2008

Thyroid hormone components are expressed in three sequential waves during development of the chick retina

scientific article

Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates ⬇️

scientific article published on April 27, 2012

Transcriptome sequencing of single cells with Smart-Seq.

scientific article

Transcriptomic analyses of Onecut1 and Onecut2 deficient retinas

scientific article published on April 2015

Transplantation of iPSC-derived TM cells rescues glaucoma phenotypes in vivo.

scientific article published on 06 June 2016

List of works by Jeffrey M. Trimarchi

A primer on gene expression and microarrays for machine learning researchers.

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies

ALS-associated genes display CNS expression in the developing zebrafish

Analysis of gene expression in wild-type and Notch1 mutant retinal cells by single cell profiling.

Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data.

Coexpression of Normally Incompatible Developmental Pathways in Retinoblastoma Genesis ⬇️

Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates.

Complementary feature selection from alternative splicing events and gene expression for phenotype prediction.

Development and diversification of retinal amacrine interneurons at single cell resolution

Disentangling neural cell diversity using single-cell transcriptomics

E2F-6, a member of the E2F family that can behave as a transcriptional repressor ⬇️

Expression Profiling of Developing Zebrafish Retinal Cells.

Identification of genes expressed preferentially in the developing peripheral margin of the optic cup.

Identification of molecular markers of bipolar cells in the murine retina

Individual retinal progenitor cells display extensive heterogeneity of gene expression

Loss of gq/11 genes does not abolish melanopsin phototransduction

Making of a retinal cell: insights into retinal cell-fate determination.

Molecular heterogeneity of developing retinal ganglion and amacrine cells revealed through single cell gene expression profiling

Onecut1 and Onecut2 play critical roles in the development of the mouse retina

Plasma-seq: a novel strategy for metastatic prostate cancer analysis

Polo-Like Kinase 3 Appears Dispensable for Normal Retinal Development Despite Robust Embryonic Expression

Proofreading-defective DNA polymerase II increases adaptive mutation in Escherichia coli.

Sibling rivalry in the E2F family

Single cell transcriptome profiling of developing chick retinal cells

Single-cell RNA-Seq of Defined Subsets of Retinal Ganglion Cells

Single-cell profiling of developing and mature retinal neurons.

Temporal requirement of the alternative-splicing factor Sfrs1 for the survival of retinal neurons.

The E2F6 transcription factor is a component of the mammalian Bmi1-containing polycomb complex

The Trim family of genes and the retina: Expression and functional characterization

The transcriptome of retinal Müller glial cells

Thyroid hormone components are expressed in three sequential waves during development of the chick retina

Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates ⬇️

Transcriptome sequencing of single cells with Smart-Seq.

Transcriptomic analyses of Onecut1 and Onecut2 deficient retinas

Transplantation of iPSC-derived TM cells rescues glaucoma phenotypes in vivo.