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List of works by Felix Krueger

5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer

scientific article published on April 2015

8C-like cells capture the human zygotic genome activation program in vitro

publication published on 24 February 2022

Allele-specific binding of ZFP57 in the epigenetic regulation of imprinted and non-imprinted monoallelic expression

scientific article published on 30 May 2015

B-SOLANA: an approach for the analysis of two-base encoding bisulfite sequencing data

scientific article

Base-pair resolution DNA methylome of the EBV-positive Endemic Burkitt lymphoma cell line DAUDI determined by SOLiD bisulfite-sequencing.

scientific article published on 11 January 2013

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

scientific article published on 14 April 2011

Cluster Flow: A user-friendly bioinformatics workflow tool

scientific article

Comparative Principles of DNA Methylation Reprogramming during Human and Mouse In Vitro Primordial Germ Cell Specification

scientific article published on October 2016

DNA methylation profiles define stem cell identity and reveal a tight embryonic-extraembryonic lineage boundary

scientific article published in December 2012

DNA methylome analysis using short bisulfite sequencing data

scientific article

Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape

scientific article

Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

scientific article published on 28 March 2017

Down-regulation of Cdx2 in colorectal carcinoma cells by the Raf-MEK-ERK 1/2 pathway

scientific article

Dynamic CpG island methylation landscape in oocytes and preimplantation embryos

scientific article

Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation

scientific article (publication date: 19 May 2011)

Efficient targeted DNA methylation with chimeric dCas9-Dnmt3a-Dnmt3L methyltransferase

scientific article published on 29 November 2016

Epigenetic memory of the first cell fate decision prevents complete ES cell reprogramming into trophoblast.

scientific article published on 26 November 2014

Erratum to: Deep sequencing and de novo assembly of the mouse occyte transcriptome define the contribution of transcription to the DNA methylation landscape

scientific article published on 3 December 2015

FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency

scientific article published on 11 July 2013

FGF signalling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency.

scientific article published on 19 August 2013

Gender Differences in Global but Not Targeted Demethylation in iPSC Reprogramming.

scientific article published on January 2017

Genome-wide analysis of DNA replication and DNA double-strand breaks using TrAEL-seq

scientific article published on 24 March 2021

Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq).

scientific article

Genome-wide bisulfite sequencing in zygotes identifies demethylation targets and maps the contribution of TET3 oxidation.

scientific article

Large scale loss of data in low-diversity illumina sequencing libraries can be recovered by deferred cluster calling

scientific article

Low rates of mutation in clinical grade human pluripotent stem cells under different culture conditions

scientific article published on 23 March 2020

MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs

scientific article published on September 2016

Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies

scientific article

Pairing of homologous regions in the mouse genome is associated with transcription but not imprinting status

scientific article (publication date: 2012)

Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity

scientific article published on 11 January 2016

Paternal chronic colitis causes epigenetic inheritance of susceptibility to colitis.

scientific article published on 19 August 2016

Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

scientific article

Resetting transcription factor control circuitry toward ground-state pluripotency in human

scientific article

SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes.

scientific article

SWI/SNF-like chromatin remodeling factor Fun30 supports point centromere function in S. cerevisiae.

scientific article

Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses

scientific article published on 01 April 2022

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

scientific article

Stimulation of adaptive gene amplification by origin firing under replication fork constraint

scientific article published on 01 January 2022

The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells

scientific article

The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome

scientific article published in Nature Communications

Transcription-induced formation of extrachromosomal DNA during yeast ageing

scientific article published on 03 December 2019

Transcriptional Activation of Pericentromeric Satellite Repeats and Disruption of Centromeric Clustering upon Proteasome Inhibition

scientific article

Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination

scientific article published on 31 May 2016

Unbiased quantification of immunoglobulin diversity at the DNA level with VDJ-seq.

scientific article published on 3 May 2018

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells

scientific article published on 22 February 2018

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