List of works by Ali Ebrahim

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

scientific article

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

scientific article

Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii

scientific article

Do genome-scale models need exact solvers or clearer standards?

scientific article published on 14 October 2015

Electrical detection of TATA binding protein at DNA-modified microelectrodes

scientific article published on 14 February 2008

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways

scientific article

Evolution of Escherichia coli to 42 °C and subsequent genetic engineering reveals adaptive mechanisms and novel mutations

scientific article

GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data

scientific article

Model-driven discovery of underground metabolic functions in Escherichia coli

scientific article

Multi-omic data integration enables discovery of hidden biological regularities

scientific article

Sulfide-driven microbial electrosynthesis.

scientific article

Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.

scientific article

Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium

scientific article

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