List of works - James R. Bradford

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

scientific article

A primer on learning in Bayesian networks for computational biology

scientific article

An extended set of PRDM1/BLIMP1 target genes links binding motif type to dynamic repression

scientific article published on 26 April 2010

Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis

scientific article published on July 2006

Asymmetric mutation rates at enzyme-inhibitor interfaces: implications for the protein-protein docking problem

scientific article published on September 2003

Combining the interactome and deleterious SNP predictions to improve disease gene identification

scientific article published in March 2009

Comprehensive functional profiling of long non-coding RNAs through a novel pan-cancer integration approach and modular analysis of their protein-coding gene association networks.

scientific article published on 3 June 2019

Consensus Analysis of Whole Transcriptome Profiles from Two Breast Cancer Patient Cohorts Reveals Long Non-Coding RNAs Associated with Intrinsic Subtype and the Tumour Microenvironment

scientific article

Extracellular vesicle microRNA cargo is correlated with HPV status in oropharyngeal carcinoma

scientific article published on 10 October 2018

GO-At: in silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data

scientific article

Gene function prediction using semantic similarity clustering and enrichment analysis in the malaria parasite Plasmodium falciparum

scientific article

Identification of novel vascular targets in lung cancer

scientific article published on 23 December 2014

Improved prediction of protein-protein binding sites using a support vector machines approach

scientific article published on 21 December 2004

Inference in Bayesian networks

scientific article

Inhibiting PI3Kβ with AZD8186 Regulates Key Metabolic Pathways in PTEN-Null Tumors

scientific article published on 2 October 2017

Insights into protein-protein interfaces using a Bayesian network prediction method

scientific article published on 21 July 2006

Multi-omic measurement of mutually exclusive loss-of-function enriches for candidate synthetic lethal gene pairs

scientific article published on 19 January 2016

PlasmoPredict: a gene function prediction website for Plasmodium falciparum

scientific article published on 19 January 2010

Predicting the effect of missense mutations on protein function: analysis with Bayesian networks ⬇️

scientific article

Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in S. pombe

scientific article published on 20 December 2011

RNA-Seq Differentiates Tumour and Host mRNA Expression Changes Induced by Treatment of Human Tumour Xenografts with the VEGFR Tyrosine Kinase Inhibitor Cediranib

scientific article

Whole transcriptome profiling of patient-derived xenograft models as a tool to identify both tumor and stromal specific biomarkers

scientific article published on 09 March 2016

List of works by James R. Bradford

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

A primer on learning in Bayesian networks for computational biology

An extended set of PRDM1/BLIMP1 target genes links binding motif type to dynamic repression

Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis

Asymmetric mutation rates at enzyme-inhibitor interfaces: implications for the protein-protein docking problem

Combining the interactome and deleterious SNP predictions to improve disease gene identification

Comprehensive functional profiling of long non-coding RNAs through a novel pan-cancer integration approach and modular analysis of their protein-coding gene association networks.

Consensus Analysis of Whole Transcriptome Profiles from Two Breast Cancer Patient Cohorts Reveals Long Non-Coding RNAs Associated with Intrinsic Subtype and the Tumour Microenvironment

Extracellular vesicle microRNA cargo is correlated with HPV status in oropharyngeal carcinoma

GO-At: in silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data

Gene function prediction using semantic similarity clustering and enrichment analysis in the malaria parasite Plasmodium falciparum

Identification of novel vascular targets in lung cancer

Improved prediction of protein-protein binding sites using a support vector machines approach

Inference in Bayesian networks

Inhibiting PI3Kβ with AZD8186 Regulates Key Metabolic Pathways in PTEN-Null Tumors

Insights into protein-protein interfaces using a Bayesian network prediction method

Multi-omic measurement of mutually exclusive loss-of-function enriches for candidate synthetic lethal gene pairs

PlasmoPredict: a gene function prediction website for Plasmodium falciparum

Predicting the effect of missense mutations on protein function: analysis with Bayesian networks ⬇️

Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in S. pombe

RNA-Seq Differentiates Tumour and Host mRNA Expression Changes Induced by Treatment of Human Tumour Xenografts with the VEGFR Tyrosine Kinase Inhibitor Cediranib

Whole transcriptome profiling of patient-derived xenograft models as a tool to identify both tumor and stromal specific biomarkers