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List of works by Sudipto Saha

Adaptability in protein structures: structural dynamics and implications in ligand design.

scientific article

AlgPred: prediction of allergenic proteins and mapping of IgE epitopes.

scientific article published on July 2006

Allergen databases.

scientific article published in January 2014

Allergic asthma biomarkers using systems approaches

scientific article published on 08 January 2014

Bcipep: a database of B-cell epitopes

scientific article

Computational framework for analysis of prey-prey associations in interaction proteomics identifies novel human protein-protein interactions and networks

scientific article published on 21 August 2012

DNA and chromatin modification networks distinguish stem cell pluripotent ground states.

scientific article

Dynamic modularity of host protein interaction networks in Salmonella Typhi infection

scientific article

Enhanced energy metabolism contributes to the extended life span of calorie-restricted Caenorhabditis elegans

scientific article

High throughput screen identifies small molecule inhibitors specific for Mycobacterium tuberculosis phosphoserine phosphatase

scientific journal article

In silico modeling of phosphorylation dependent and independent c-Myc degradation

scientific article published on 08 May 2019

LMDIPred: A web-server for prediction of linear peptide sequences binding to SH3, WW and PDZ domains

scientific article published in PLoS ONE

LncRBase: an enriched resource for lncRNA information

scientific article

MYCbase: a database of functional sites and biochemical properties of Myc in both normal and cancer cells

scientific article

Monitoring newly synthesized proteins over the adult life span of Caenorhabditis elegans.

scientific article published on 25 February 2015

Network-based approaches for extending the Wnt signalling pathway and identifying context-specific sub-networks

article

PPIMpred: a web server for high-throughput screening of small molecules targeting protein-protein interaction

scientific article

Pilot-Scale Study Of Human Plasma Proteomics Identifies ApoE And IL33 As Markers In Atopic Asthma

scientific article published on 20 September 2019

Prediction of continuous B-cell epitopes in an antigen using recurrent neural network

scientific article published in October 2006

Prediction of interactions between viral and host proteins using supervised machine learning methods

scientific article

Ring-Hydroxylating Oxygenase database: a database of bacterial aromatic ring-hydroxylating oxygenases in the management of bioremediation and biocatalysis of aromatic compounds.

scientific article

Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs

scientific article

The Bait Compatibility Index: Computational Bait Selection for Interaction Proteomics Experiments ⬇️

scientific article published on October 1, 2010

VGIchan: prediction and classification of voltage-gated ion channels.

scientific article published on November 2006

VICMpred: an SVM-based method for the prediction of functional proteins of Gram-negative bacteria using amino acid patterns and composition.

scientific article published on February 2006

c-Maf-Dependent Growth of Mycobacterium tuberculosis in a CD14hi Subpopulation of Monocyte-Derived Macrophages

scientific article published on 05 January 2011

piRNAQuest: searching the piRNAome for silencers

scientific article

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