List of works - Robert Castelo

A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments.

scientific article

Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genes

scientific article

Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster.

scientific article

EGASP: the human ENCODE Genome Annotation Assessment Project

scientific article

GSVA: gene set variation analysis for microarray and RNA-seq data.

scientific article

Gene finding in the chicken genome

scientific article

Genetic linkage analysis of a large family identifies FIGN as a candidate modulator of reduced penetrance in heritable pulmonary arterial hypertension

scientific article published on 20 March 2019

Genome-wide postnatal changes in immunity following fetal inflammatory response

scientific article published on 02 October 2020

GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor.

scientific article

Global analysis of alternative splicing regulation by insulin and wingless signaling in Drosophila cells

scientific article published on 29 January 2009

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Inference of regulatory networks from microarray data with R and the bioconductor package qpgraph.

scientific article

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

scientific article

Mapping eQTL networks with mixed graphical Markov models ⬇️

scientific article published on 29 September 2014

Monitoring gene therapy by external imaging of mRNA: pilot study on murine erythropoietin.

scientific article published on October 2007

Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

scientific article

Public data and open source tools for multi-assay genomic investigation of disease

scientific article

Reverse engineering molecular regulatory networks from microarray data with qp-graphs.

scientific article

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

scientific article

Splice site identification by idlBNs.

scientific article published in August 2004

Tandem chimerism as a means to increase protein complexity in the human genome

scientific article

The propagation of perturbations in rewired bacterial gene networks

scientific article

Thrombin stimulates insulin secretion via protease-activated receptor-3

scientific article published on 8 January 2016

Umbilical cord gene expression reveals the molecular architecture of the fetal inflammatory response in extremely preterm newborns

scientific article published on 5 November 2015

List of works by Robert Castelo

A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments.

Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genes

Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster.

EGASP: the human ENCODE Genome Annotation Assessment Project

GSVA: gene set variation analysis for microarray and RNA-seq data.

Gene finding in the chicken genome

Genetic linkage analysis of a large family identifies FIGN as a candidate modulator of reduced penetrance in heritable pulmonary arterial hypertension

Genome-wide postnatal changes in immunity following fetal inflammatory response

GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor.

Global analysis of alternative splicing regulation by insulin and wingless signaling in Drosophila cells

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Inference of regulatory networks from microarray data with R and the bioconductor package qpgraph.

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

Mapping eQTL networks with mixed graphical Markov models ⬇️

Monitoring gene therapy by external imaging of mRNA: pilot study on murine erythropoietin.

Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

Public data and open source tools for multi-assay genomic investigation of disease

Reverse engineering molecular regulatory networks from microarray data with qp-graphs.

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Splice site identification by idlBNs.

Tandem chimerism as a means to increase protein complexity in the human genome

The propagation of perturbations in rewired bacterial gene networks

Thrombin stimulates insulin secretion via protease-activated receptor-3

Umbilical cord gene expression reveals the molecular architecture of the fetal inflammatory response in extremely preterm newborns