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List of works by Simon J McIlroy

"Candidatus Propionivibrio aalborgensis": A Novel Glycogen Accumulating Organism Abundant in Full-Scale Enhanced Biological Phosphorus Removal Plants

scientific article published on 04 July 2016

'Candidatus Competibacter'-lineage genomes retrieved from metagenomes reveal functional metabolic diversity.

scientific article published on 31 October 2013

A Critical Assessment of the Microorganisms Proposed to be Important to Enhanced Biological Phosphorus Removal in Full-Scale Wastewater Treatment Systems

scientific article

A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal

scientific article published on 22 November 2012

An examination of the mechanisms for stable foam formation in activated sludge systems

scientific article published on 28 December 2010

Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae

scientific article published on 27 January 2020

Biochemistry and molecular biology of exocellular fungal beta-(1,3)- and beta-(1,6)-glucanases.

scientific article published on March 2007

Biomass granulation in an aerobic:anaerobic-enhanced biological phosphorus removal process in a sequencing batch reactor with varying pH.

scientific article published on 7 April 2009

Candidatus Monilibacter spp., common bulking filaments in activated sludge, are members of Cluster III Defluviicoccus

scientific article published on 12 August 2009

Characterization of the In Situ Ecophysiology of Novel Phylotypes in Nutrient Removal Activated Sludge Treatment Plants

scientific article published on 4 September 2015

Complete Genome Sequence of the Bacterium Aalborg_AAW-1, Representing a Novel Family within the Candidate Phylum SR1.

scientific article published on 11 June 2015

Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge

scientific article

Dynamics of the Fouling Layer Microbial Community in a Membrane Bioreactor.

scientific article

Ecology of the microbial community removing phosphate from wastewater under continuously aerobic conditions in a sequencing batch reactor

scientific article

Elucidating further phylogenetic diversity among the Defluviicoccus-related glycogen-accumulating organisms in activated sludge.

scientific article

Extracting nucleic acids from activated sludge which reflect community population diversity

scientific article published in November 2009

FACS enrichment and identification of floc-associated alphaproteobacterial tetrad-forming organisms in an activated sludge community

scientific article

Filamentous bacterium Eikelboom type 0092 in activated sludge plants in Australia is a member of the phylum Chloroflexi

scientific article published on 13 February 2009

Filamentous members of cluster III Defluviicoccus have the in situ phenotype expected of a glycogen-accumulating organism in activated sludge.

scientific article published on 14 July 2010

Generation of Comprehensive Ecosystem-Specific Reference Databases with Species-Level Resolution by High-Throughput Full-Length 16S rRNA Gene Sequencing and Automated Taxonomy Assignment (AutoTax)

scientific article published on 22 September 2020

Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge

scientific article published on 23 February 2016

Genomic insights into Candidatus Amarolinea aalborgensis gen. nov., sp. nov., associated with settleability problems in wastewater treatment plants

scientific article published on 16 August 2018

Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters

scientific article

Genomic insights into the metabolism of 'Candidatus Defluviicoccus seviourii', a member of Defluviicoccus cluster III abundant in industrial activated sludge

scientific article published on 01 February 2019

High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov

scientific article published on 27 February 2015

Identification of active denitrifiers in full-scale nutrient removal wastewater treatment systems

scientific article

In situ profiling of microbial communities in full-scale aerobic sequencing batch reactors treating winery waste in australia

scientific article

In situ visualisation of the abundant Chloroflexi populations in full-scale anaerobic digesters and the fate of immigrating species

scientific article published in PLoS ONE

Isolation and characterization of two plasmids in a clinical Acinetobacter nosocomialis strain.

scientific article

Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family Methanoperedenaceae

scientific article published on 30 June 2020

Monitoring foaming potential in anaerobic digesters

scientific article published on 02 March 2018

Non-target sites with single nucleotide insertions or deletions are frequently found in 16S rRNA sequences and can lead to false positives in fluorescence in situ hybridization (FISH).

scientific article

Novel prosthecate bacteria from the candidate phylum Acetothermia

scientific article published on 08 June 2018

Phylogeny and in situ identification of a novel gammaproteobacterium in activated sludge

scientific article published on 3 June 2009

Re-appraisal of the phylogeny and fluorescence in situ hybridization probes for the analysis of the Competibacteraceae in wastewater treatment systems

scientific article published on 2 December 2014

Re-evaluating the microbiology of the enhanced biological phosphorus removal process

scientific article published on 05 April 2019

Resolving the individual contribution of key microbial populations to enhanced biological phosphorus removal with Raman-FISH

scientific article published on 20 March 2019

Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias.

scientific article published in January 2018

The activated sludge bulking filament Eikelboom morphotype 0914 is a member of the Chloroflexi

scientific article published on 01 April 2011

The impact of immigration on microbial community composition in full-scale anaerobic digesters

scientific article published on 24 August 2017

The microbiology of phosphorus removal in activated sludge processes-the current state of play.

scientific article published on April 2008

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