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List of works by Angelo Facchiano

3D Modelling of Three Pro-Inflammatory Molecules in Selected Fish Species

scientific article published on 01 January 2010

A CD4 homologue in sea bass (Dicentrarchus labrax): molecular characterization and structural analysis

scientific article published on 9 April 2008

A New APEH Cluster with Antioxidant Functions in the Antarctic Hemoglobinless Icefish Chionodraco hamatus

scientific article published on 6 May 2015

A genomic view of estrogen actions in human breast cancer cells by expression profiling of the hormone-responsive transcriptome

scientific article published on June 2004

A novel class of bifunctional acylpeptide hydrolases--potential role in the antioxidant defense systems of the Antarctic fish Trematomus bernacchii

scientific article published on 10 December 2013

A theoretical study on predicted protein targets of apple polyphenols and possible mechanisms of chemoprevention in colorectal cancer

scientific article

Alteration in the ubiquitin structure and function in the human lens: a possible mechanism of senile cataractogenesis.

scientific article

Amino acid propensities for secondary structures are influenced by the protein structural class

scientific article

An investigation into the molecular basis of cancer comorbidities in coronavirus infection

scientific article published on 24 September 2020

Analysis of galactosemia-linked mutations of GALT enzyme using a computational biology approach

scientific article published on 11 December 2009

Aryl hydrocarbon receptor, a tumor grade‑associated marker of oral cancer, is directly downregulated by polydatin: A pilot study

scientific article published on 10 July 2018

Assessment of the conformational features of vasoactive intestinal peptide in solution by limited proteolysis experiments.

scientific article

Binding of mycotoxins to proteins involved in neuronal plasticity: a combined in silico/wet investigation

scientific article published on 9 November 2017

Biochemical characterization and homology modeling of a purine-specific ribonucleoside hydrolase from the archaeon Sulfolobus solfataricus: insights into mechanisms of protein stabilization

scientific article published on 24 December 2008

Bioinformatics in Italy: BITS 2012, the ninth annual meeting of the Italian Society of Bioinformatics

scientific article

Bioinformatics methodologies for coeliac disease and its comorbidities

scientific article published on 16 November 2018

Classification of microbial transglutaminases by evaluation of evolution trees, sequence motifs, secondary structure topology and conservation of potential catalytic residues

scientific article published on 27 December 2018

Clinical and molecular spectra in galactosemic patients from neonatal screening in northeastern Italy: structural and functional characterization of new variations in the galactose-1-phosphate uridyltransferase (GALT) gene.

scientific article

Comparative gene expression profiling reveals partially overlapping but distinct genomic actions of different antiestrogens in human breast cancer cells

scientific article published on August 2006

Comparing the modeled structures of PR-4 proteins from wheat

scientific article published on 7 February 2003

Complement C3f serum levels may predict breast cancer risk in women with gross cystic disease of the breast

scientific article published on 30 April 2013

Conformational diseases and structure-toxicity relationships: lessons from prion-derived peptides

scientific article published on February 2007

Correlation assessment among clinical phenotypes, expression analysis and molecular modeling of 14 novel variations in the human galactose-1-phosphate uridylyltransferase gene ⬇️

scientific article published on April 30, 2012

Critical assessment of side chain conformation prediction in modelling of single point amino acid mutation

scientific article published in January 2010

Diversity, molecular characterization and expression of T cell receptor γ in a teleost fish, the sea bass (Dicentrarchus labrax, L).

scientific article

Energy-based prediction of amino acid-nucleotide base recognition

scientific article published on 01 September 2008

Evaluation of the structural quality of modeled proteins by using globularity criteria

scientific article published on 9 March 2007

Experimental Evidence and In Silico Identification of Tryptophan Decarboxylase in Citrus Genus.

scientific article

FASMA: a service to format and analyze sequences in multiple alignments

scientific article published on December 2007

Functional hypothesis on miraculin' sweetness by a molecular dynamics approach.

scientific article published on 6 May 2010

GALT protein database: querying structural and functional features of GALT enzyme.

scientific article

Geena 2, improved automated analysis of MALDI/TOF mass spectra

scientific article

GeenaR: A Web Tool for Reproducible MALDI-TOF Analysis

scientific article published on 29 March 2021

Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites

scientific article published on 11 July 2019

Homology Modeling Studies on Human Galactose-1-phosphate Uridylyltransferase and on Its Galactosemia-Related Mutant Q188R Provide an Explanation of Molecular Effects of the Mutation on Homo- and Heterodimers

scientific article published on 01 February 2005

Human Prion Protein Helices: Studying Their Stability by Molecular Dynamics Simulations (SUPPLEMENTARY MATERIAL)

article

Human aryl-hydrocarbon receptor and its interaction with dioxin and physiological ligands investigated by molecular modelling and docking simulations

scientific article published on 17 August 2011

Identification of a beta-lactoglobulin lactosylation site.

scientific article

Identification of proteins associated with ligand-activated estrogen receptor α in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS

scientific article

Immunoglobulin T from sea bass (Dicentrarchus labrax L.): molecular characterization, tissue localization and expression after nodavirus infection.

scientific article

In silico approach to find chymase inhibitors among biogenic compounds

scientific article published on 13 May 2016

Integrating mutation data and structural analysis of the TP53 tumor-suppressor protein

scientific article

Interaction of human chymase with ginkgolides, terpene trilactones of Ginkgo biloba investigated by molecular docking simulations

scientific article

Interleukin-10 expression by real-time PCR and homology modelling analysis in the European sea bass (Dicentrarchus Labrax L.)

Intestinal T cell responses to gluten peptides are largely heterogeneous: implications for a peptide-based therapy in celiac disease

scientific article published in April 2009

Matrix-assisted laser desorption ionization-time of flight mass spectrometry for the discrimination of food-borne microorganisms

scientific article published in February 2006

Modeling the 3D structure of wheat subtilisin/chymotrypsin inhibitor (WSCI). Probing the reactive site with two susceptible proteinases by time-course analysis and molecular dynamics simulations

scientific article published in July 2006

Modelling of HLA-DQ2 and its interaction with gluten peptides to explain molecular recognition in celiac disease

scientific article

Modelling of fish interleukin-1 and its receptor.

scientific article published in May 2004

Molecular Docking Simulations on Histone Deacetylases (HDAC)-1 and -2 to Investigate the Flavone Binding

scientific article published on 04 December 2020

Molecular and structural characterisation of a macrophage migration inhibitory factor from sea bass (Dicentrarchus labrax L.).

scientific article published on 17 March 2010

Molecular characterisation and structural analysis of an interferon homologue in sea bass (Dicentrarchus labrax L.).

scientific article published on 25 October 2008

Molecular characterization, gene structure and antibacterial activity of a g-type lysozyme from the European sea bass (Dicentrarchus labrax L.).

scientific article published on 14 June 2014

Molecular cloning, differential expression and 3D structural analysis of the MHC class-II beta chain from sea bass (Dicentrarchus labrax L.).

scientific article

Molecular identification of ERalpha-positive breast cancer cells by the expression profile of an intrinsic set of estrogen regulated genes

scientific article published on September 2004

Molecular modelling of co-receptor CD8αα and its complex with MHC class I and T-cell receptor in sea bream (Sparus aurata)

scientific article published on 07 April 2008

Molecular modelling of miraculin: Structural analyses and functional hypotheses.

scientific article published on 26 December 2007

Molecular properties of glutamate dehydrogenase from the extreme thermophilic archaebacterium Sulfolobus solfataricus

scientific article published in September 1995

Mutation spectrum in the French cohort of galactosemic patients and structural simulation of 27 novel missense variations

scientific article published on 6 August 2012

NMR and computational data of two novel antimicrobial peptides

scientific article

New antimicrobial peptides against foodborne pathogens: From in silico design to experimental evidence.

scientific article published on 17 May 2016

New computational strategy to analyze the interactions of ERα and ERβ with different ERE sequences

scientific article published on 01 April 2007

PDGFR-alpha inhibits melanoma growth via CXCL10/IP-10: a multi-omics approach

scientific article published on 13 October 2016

Performance of Web tools for predicting changes in protein stability caused by mutations

scientific article published on 05 July 2021

Polymorphism of the phosphoserine phosphatase gene in Streptococcus thermophilus and its potential use for typing and monitoring of population diversity.

scientific article

Pre-Processing MALDI/TOF Mass Spectra by Using Geena 2

scientific article published on 13 November 2018

PreSSAPro: a software for the prediction of secondary structure by amino acid properties

scientific article

Prediction of the protein structural class by specific peptide frequencies

scientific article published on 10 October 2008

Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics

scientific article published on June 2015

Primary structure of alpha-globin chains from river buffalo (Bubalus bubalis L.) hemoglobins

scientific article published on 01 February 2001

Probing the modelled structure of wheatwin1 by controlled proteolysis and sequence analysis of unfractionated digestion mixtures

scientific article published on 01 August 1999

Proteomic profile in familial breast cancer patients

scientific article

Pyrimidine-specific ribonucleoside hydrolase from the archaeon Sulfolobus solfataricus--biochemical characterization and homology modeling

scientific article published on 18 March 2008

Rapid peptidomic profiling of peritoneal fluid by MALDI-TOF mass spectrometry for the identification of biomarkers of endometriosis.

scientific article

Redesigning the reactive site loop of the wheat subtilisin/chymotrypsin inhibitor (WSCI) by site-directed mutagenesis. A protein-protein interaction study by affinity chromatography and molecular modeling

scientific article published on 16 June 2009

Role of 'shared epitope' and other citrullination-sites in rheumatoid arthritis and in melanoma

scientific article published on 01 October 2017

Simulation of conformational changes occurring when a protein interacts with its receptor

scientific article published on 30 March 2007

Standardized sample preparation phases for a quantitative measurement of plasma peptidome profiling by MALDI-TOF.

scientific article

Structural and Functional Characterization of Lipoxygenases from Diatoms by Bioinformatics and Modelling Studies

scientific article published in 2024

Structure and Ligands Interactions of Tryptophan Decarboxylase by Molecular Modeling and Docking Simulations

scientific article published on 26 March 2019

T cell receptor beta chain from sea bream (Sparus aurata): molecular cloning, expression and modelling of the complexes with MHC class I.

scientific article

The CD8alpha from sea bass (Dicentrarchus labrax L.): Cloning, expression and 3D modelling

scientific article

The N-terminal 1-16 peptide derived in vivo from protein seminal vesicle protein IV modulates alpha-thrombin activity: potential clinical implications

scientific article published on October 2008

The amino acid sequence of a protein from wheat kernel closely related to proteins involved in the mechanisms of plant defence

article

The application of atmospheric pressure matrix-assisted laser desorption/ionization to the analysis of long-term cryopreserved serum peptidome

scientific article

The evolution of a Web resource: The Galactosemia Proteins Database 2.0.

scientific article published on 29 September 2017

The fluorescent monomeric protein Kusabira Orange. Pressure effect on its structure and stability.

scientific article published on 2 June 2016

The genetic code is not an optimal code in a model taking into account both the biosynthetic relationships between amino acids and their physicochemical properties

scientific article published on 20 September 2018

The misuse of terms in scientific literature

scientific article published on 09 August 2010

Theoretical model of the three-dimensional structure of a sugar-binding protein from Pyrococcus horikoshii: structural analysis and sugar-binding simulations

scientific article published on June 2004

Transamidation of wheat flour inhibits the response to gliadin of intestinal T cells in celiac disease.

scientific article published on 20 June 2007

Transglutaminase-mediated polyamination of vasoactive intestinal peptide (VIP) Gln16 residue modulates VIP/PACAP receptor activity

scientific article published in July 2002

Uncommon functional properties of the first piscine 26S proteasome from the Antarctic notothenioid Trematomus bernacchii

scientific article published on March 2016

Understanding the role of the topology in protein folding by computational inverse folding experiments

scientific article published on 8 April 2008

Unusual Antioxidant Properties of 26S Proteasome Isolated from Cold-Adapted Organisms.

scientific article published on 25 July 2017

Wheat Subtilisin/Chymotrypsin Inhibitor (WSCI) as a scaffold for novel serine protease inhibitors with a given specificity

scientific article published in October 2012

When it comes to homology, bad habits die hard

scientific article published on 30 January 2009

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