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List of works by Shu-Dong Zhang

A combined connectivity mapping and pharmacoepidemiology approach to identify existing medications with breast cancer causing or preventing properties.

scientific article

A gene-signature progression approach to identifying candidate small-molecule cancer therapeutics with connectivity mapping

scientific article

A generic Transcriptomics Reporting Framework (TRF) for 'omics data processing and analysis.

scientific article published on 4 November 2017

A novel method for isolation of human lung T cells from lung resection tissue reveals increased expression of GAPDH and CXCR6.

scientific article published on 6 January 2009

A role of autophagy in PTP4A3-driven cancer progression.

scientific article

A simple and robust method for connecting small-molecule drugs using gene-expression signatures

scientific article

Activation and cleavage of SASH1 by caspase-3 mediates an apoptotic response

scientific article published on 10 November 2016

An integrated meta-analysis approach to identifying medications with potential to alter breast cancer risk through connectivity mapping.

scientific article published on 21 December 2017

Analysis of Gene Expression in 3D Spheroids Highlights a Survival Role for ASS1 in Mesothelioma

scientific article

Application of connectivity mapping in predictive toxicology based on gene-expression similarity.

scientific article published on 27 September 2009

Association between the expression levels of TAZ, AXL and CTGF and clinicopathological parameters in patients with colon cancer.

scientific article

Association of gene expression with sequential proliferation, differentiation and tumor formation in murine skin

scientific article published on 14 March 2006

Barrier-to-autointegration factor 1 (Banf1) regulates poly [ADP-ribose] polymerase 1 (PARP1) activity following oxidative DNA damage

scientific article published on 03 December 2019

CD133 in brain tumor: the prognostic factor.

scientific article published on 31 December 2016

Clinical and in vitro analysis of Osteopontin as a prognostic indicator and unveil its potential downstream targets in bladder cancer

scientific article published in November 2017

Combinatorial use of bone morphogenetic protein 6, noggin and SOST significantly predicts cancer progression ⬇️

scientific article published on April 3, 2012

Computational cancer biology: education is a natural key to many locks

scientific article published on 15 January 2015

Connectivity Mapping for Candidate Therapeutics Identification Using Next Generation Sequencing RNA-Seq Data

scientific article (publication date: 2013)

Connectivity mapping (ssCMap) to predict A20-inducing drugs and their antiinflammatory action in cystic fibrosis

scientific article published on 10 June 2016

Connectivity mapping using a combined gene signature from multiple colorectal cancer datasets identified candidate drugs including existing chemotherapies

scientific article published on September 2015

Cystic Fibrosis from Laboratory to Bedside: The Role of A20 in NF-κB-Mediated Inflammation

scientific article published on 25 April 2015

Differential TERT promoter methylation and response to 5-aza-2'-deoxycytidine in acute myeloid leukemia cell lines: TERT expression, telomerase activity, telomere length, and cell death.

scientific article

Doxorubicin in vivo rapidly alters expression and translation of myocardial electron transport chain genes, leads to ATP loss and caspase 3 activation

scientific article

Dry computational approaches for wet medical problems

scientific article published on 25 January 2014

Effect of pooling samples on the efficiency of comparative studies using microarrays

scientific article published on 18 October 2005

Entinostat prevents leukemia maintenance in a collaborating oncogene-dependent model of cytogenetically normal acute myeloid leukemia

scientific article published in July 2013

Erythropoietin drives breast cancer progression by activation of its receptor EPOR

scientific article

Expression of CDCA3 Is a Prognostic Biomarker and Potential Therapeutic Target in Non-Small Cell Lung Cancer

scientific article published on 6 May 2017

Expression of minichromosome maintenance genes in renal cell carcinoma

scientific article published on 15 November 2017

Identification and validation of the dopamine agonist bromocriptine as a novel therapy for high-risk myelodysplastic syndromes and secondary acute myeloid leukemia.

scientific article published on 28 December 2015

Identification of TWIST-interacting genes in prostate cancer.

scientific article published on 22 January 2017

Identification of candidate small-molecule therapeutics to cancer by gene-signature perturbation in connectivity mapping

scientific article

In pursuit of effective toxicogenomics.

scientific article published in August 2005

Judge a paper on its own merits, not its journal's

scientific article published in July 2006

KRAS mutant colorectal cancer gene signatures identified angiotensin II receptor blockers as potential therapies

scientific article published on 10 December 2016

Néstor-Guillermo Progeria Syndrome: a biochemical insight into Barrier-to-Autointegration Factor 1, alanine 12 threonine mutation

scientific article published on 12 December 2014

Oncogenic roles of PRL-3 in FLT3-ITD induced acute myeloid leukaemia.

scientific article published on 08 August 2013

PRL-3 activates mTORC1 in Cancer Progression

scientific article

PRL3-zumab, a first-in-class humanized antibody for cancer therapy.

scientific article published on 16 June 2016

Prognostic significance of combining VEGFA, FLT1 and KDR mRNA expression in lung cancer

scientific article published on 24 June 2015

QUADrATiC: scalable gene expression connectivity mapping for repurposing FDA-approved therapeutics

scientific article

RanGTPase: a candidate for Myc-mediated cancer progression.

scientific article

Regarding "Co-expression of SNAIL and TWIST determines prognosis in estrogen receptor-positive early breast cancer patients"

scientific article published on 26 October 2011

Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast.

scientific article published on 13 February 2014

SASH1 mediates sensitivity of breast cancer cells to chloropyramine and is associated with prognosis in breast cancer.

scientific article published on 14 September 2016

TAZ Expression as a Prognostic Indicator in Colorectal Cancer ⬇️

scientific article published on January 23, 2013

The Prognostic Significance of Combining VEGFA, FLT1 and KDR mRNA Expressions in Brain Tumors

scientific article published on 15 July 2015

The prognostic significance of Cdc6 and Cdt1 in breast cancer

scientific article published on 20 April 2017

The prognostic significance of DAPK1 in bladder cancer

scientific article

The prognostic significance of PD-L1 in bladder cancer

scientific article published on 27 April 2015

The significance of combining VEGFA, FLT1, and KDR expressions in colon cancer patient prognosis and predicting response to bevacizumab

scientific article

cudaMap: a GPU accelerated program for gene expression connectivity mapping

scientific article

miR-7 and miR-214 are specifically expressed during neuroblastoma differentiation, cortical development and embryonic stem cells differentiation, and control neurite outgrowth in vitro

scientific article

sscMap: an extensible Java application for connecting small-molecule drugs using gene-expression signatures

scientific article published on 31 July 2009

β-defensin 1 expression in HCV infected liver/liver cancer: an important role in protecting HCV progression and liver cancer development

scientific article published on 17 October 2017

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