List of works - Takashi Ishida

A Benchmark Dataset for Evaluating Practical Performance of Model Quality Assessment of Homology Models

scientific article published in 2022

A prospective compound screening contest identified broader inhibitors for Sirtuin 1

scientific article published on 20 December 2019

Absolute quality evaluation of protein model structures using statistical potentials with respect to the native and reference states.

scientific article

Acceleration of sequence clustering using longest common subsequence filtering

scientific article

Assessing statistical reliability of phylogenetic trees via a speedy double bootstrap method

scientific article published on 26 February 2013

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

scientific article

D²P²: database of disordered protein predictions

scientific article

Faster sequence homology searches by clustering subsequences

scientific article

GHOSTX: an improved sequence homology search algorithm using a query suffix array and a database suffix array

scientific article

Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target

scientific article

Identification of transient hub proteins and the possible structural basis for their multiple interactions

scientific article published on January 2008

MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers.

scientific article published on 6 August 2014

Potential for assessing quality of protein structure based on contact number prediction.

scientific article

PrDOS: prediction of disordered protein regions from amino acid sequence

scientific article published on 12 June 2007

Prediction of disordered regions in proteins based on the meta approach

scientific article published on 20 April 2008

Protein model accuracy estimation based on local structure quality assessment using 3D convolutional neural network

scientific article published on 05 September 2019

Protein-protein docking on hardware accelerators: comparison of GPU and MIC architectures

scientific article

Relationship between COVID-19 death toll doubling time and national BCG vaccination policy

scientific article published on 17 April 2020

List of works by Takashi Ishida

A Benchmark Dataset for Evaluating Practical Performance of Model Quality Assessment of Homology Models

A prospective compound screening contest identified broader inhibitors for Sirtuin 1

Absolute quality evaluation of protein model structures using statistical potentials with respect to the native and reference states.

Acceleration of sequence clustering using longest common subsequence filtering

Assessing statistical reliability of phylogenetic trees via a speedy double bootstrap method

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

D²P²: database of disordered protein predictions

Faster sequence homology searches by clustering subsequences

GHOSTX: an improved sequence homology search algorithm using a query suffix array and a database suffix array

Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target

Identification of transient hub proteins and the possible structural basis for their multiple interactions

MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers.

Potential for assessing quality of protein structure based on contact number prediction.

PrDOS: prediction of disordered protein regions from amino acid sequence

Prediction of disordered regions in proteins based on the meta approach

Protein model accuracy estimation based on local structure quality assessment using 3D convolutional neural network

Protein-protein docking on hardware accelerators: comparison of GPU and MIC architectures

Relationship between COVID-19 death toll doubling time and national BCG vaccination policy