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List of works by Frederik Otzen Bagger

A Gain-of-Function p53-Mutant Oncogene Promotes Cell Fate Plasticity and Myeloid Leukemia through the Pluripotency Factor FOXH1

scientific article published on 08 May 2019

A computational method for identification of vaccine targets from protein regions of conserved human leukocyte antigen binding

scientific article published on 9 December 2015

Amplification of pico-scale DNA mediated by bacterial carrier DNA for small-cell-number transcription factor ChIP-seq

scientific article

An atlas of active enhancers across human cell types and tissues

scientific article

Analysis of telomerase target gene expression effects from murine models in patient cohorts by homology translation and random survival forest modeling

scientific article published on 28 January 2016

Autophagy is required for stem cell mobilization by G-CSF.

scientific article published on 18 March 2015

BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis

scientific article published on 26 October 2015

C/EBPα is required for long-term self-renewal and lineage priming of hematopoietic stem cells and for the maintenance of epigenetic configurations in multipotent progenitors

scientific article published on 9 January 2014

COVID-19 Vaccine Candidates: Prediction and Validation of 174 SARS-CoV-2 Epitopes

scientific article (preprint)

Cellular origin of prognostic chromosomal aberrations in AML patients

scientific article published on 11 February 2015

Classification of low quality cells from single-cell RNA-seq data

scientific article published on 17 February 2016

Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients.

scientific article

Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data

scientific article published on 08 July 2019

ERG promotes the maintenance of hematopoietic stem cells by restricting their differentiation

scientific article published on September 2015

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells

scientific article

Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types

scientific article published on 26 January 2017

H3K9 dimethylation safeguards cancer cells against activation of the interferon pathway

scientific article published on 18 March 2022

HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis

scientific article published on 9 November 2012

Lack of the p42 form of C/EBPα leads to spontaneous immortalization and lineage infidelity of committed myeloid progenitors

scientific article published on 2 July 2013

Modification of T cell responses by stem cell mobilization requires direct signaling of the T cell by G-CSF and IL-10

scientific article

Peak-valley-peak pattern of histone modifications delineates active regulatory elements and their directionality

scientific article published on 19 April 2016

Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria

scientific article published on March 2017

Software-supported USER cloning strategies for site-directed mutagenesis and DNA assembly

scientific article published on 21 May 2014

Telomerase inhibition effectively targets mouse and human AML stem cells and delays relapse following chemotherapy

scientific article

Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

article

shRNA screening identifies JMJD1C as being required for leukemia maintenance

scientific article

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